miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 5' -58.9 NC_001798.1 + 43022 0.66 0.843086
Target:  5'- cCCGGGGGga-GCgCGGGGCc-CCGGGc -3'
miRNA:   3'- cGGCCCCUagaUG-GCCCUGuaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 132518 0.66 0.843086
Target:  5'- cGCaagGGGGAgcugcugaUCUACauGGACGggUCCGGGg -3'
miRNA:   3'- -CGg--CCCCU--------AGAUGgcCCUGU--AGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 68764 0.66 0.843086
Target:  5'- gGCCGaacGGGGcCUGcCCGGGugG-CCGGu -3'
miRNA:   3'- -CGGC---CCCUaGAU-GGCCCugUaGGCCu -5'
5136 5' -58.9 NC_001798.1 + 46532 0.66 0.843086
Target:  5'- gGUCGGGGGggugGCCcGGAUGUCCaGAa -3'
miRNA:   3'- -CGGCCCCUaga-UGGcCCUGUAGGcCU- -5'
5136 5' -58.9 NC_001798.1 + 97617 0.66 0.841519
Target:  5'- aGCUGGGGcgacAUCgcgacgcgggccGCCGcGGACGUgCGGGa -3'
miRNA:   3'- -CGGCCCC----UAGa-----------UGGC-CCUGUAgGCCU- -5'
5136 5' -58.9 NC_001798.1 + 16067 0.66 0.83518
Target:  5'- cGCUGGGGGcggcgggcgUCUGUgGGGGCAgacagcgcucCCGGAa -3'
miRNA:   3'- -CGGCCCCU---------AGAUGgCCCUGUa---------GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 8859 0.66 0.83518
Target:  5'- gGCCGGGaGGUC-AUCGcGGACG--CGGAa -3'
miRNA:   3'- -CGGCCC-CUAGaUGGC-CCUGUagGCCU- -5'
5136 5' -58.9 NC_001798.1 + 74879 0.66 0.83518
Target:  5'- uGCCGGuGGGUCgccACCGGGcGCGcuauucuaCCGGc -3'
miRNA:   3'- -CGGCC-CCUAGa--UGGCCC-UGUa-------GGCCu -5'
5136 5' -58.9 NC_001798.1 + 110927 0.66 0.83518
Target:  5'- cGCCGGcccgcGGUCaaaCGcGGACAUCCGGu -3'
miRNA:   3'- -CGGCCc----CUAGaugGC-CCUGUAGGCCu -5'
5136 5' -58.9 NC_001798.1 + 18218 0.66 0.830354
Target:  5'- cGCCGGGGGaCggugGgCGGGAaggguggaugguuUCCGGGg -3'
miRNA:   3'- -CGGCCCCUaGa---UgGCCCUgu-----------AGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 18286 0.66 0.827102
Target:  5'- -gCGGGGGUauaaaaggugCUcGCCGGGAaggCCGGGg -3'
miRNA:   3'- cgGCCCCUA----------GA-UGGCCCUguaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 51538 0.66 0.826285
Target:  5'- cGCCGcguGGGAcgaguccgugcgcUCggcccugGCCcuGGGACAUCCGGc -3'
miRNA:   3'- -CGGC---CCCU-------------AGa------UGG--CCCUGUAGGCCu -5'
5136 5' -58.9 NC_001798.1 + 146476 0.66 0.818858
Target:  5'- cGCCGcGGG--CU-CCGGGGCcgggCCGGGc -3'
miRNA:   3'- -CGGC-CCCuaGAuGGCCCUGua--GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 36312 0.66 0.818858
Target:  5'- cGgCGGGGcgCggGCCGGGg---CCGGGg -3'
miRNA:   3'- -CgGCCCCuaGa-UGGCCCuguaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 110321 0.66 0.815515
Target:  5'- gGCCGGGGAggucaugucggugCUGCUGGugGACA--CGGAu -3'
miRNA:   3'- -CGGCCCCUa------------GAUGGCC--CUGUagGCCU- -5'
5136 5' -58.9 NC_001798.1 + 24664 0.66 0.810455
Target:  5'- cCUGGcGGccgUGCCGGGGCuggCCGGAg -3'
miRNA:   3'- cGGCC-CCuagAUGGCCCUGua-GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 56112 0.66 0.810455
Target:  5'- cGCCGuucGGAUCggGCCGaGGAUuuUCCGGu -3'
miRNA:   3'- -CGGCc--CCUAGa-UGGC-CCUGu-AGGCCu -5'
5136 5' -58.9 NC_001798.1 + 106740 0.66 0.810455
Target:  5'- cGCCaGGGGGcCUccggagcCCGcGGGgAUCCGGAg -3'
miRNA:   3'- -CGG-CCCCUaGAu------GGC-CCUgUAGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 61462 0.66 0.801901
Target:  5'- cGCCGGGGc-CU-CCGGGcc--CCGGAg -3'
miRNA:   3'- -CGGCCCCuaGAuGGCCCuguaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 26481 0.66 0.801901
Target:  5'- cGCUGGGcGUCgGCCGcGGGCcgCgCGGGg -3'
miRNA:   3'- -CGGCCCcUAGaUGGC-CCUGuaG-GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.