Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5136 | 5' | -58.9 | NC_001798.1 | + | 132518 | 0.66 | 0.843086 |
Target: 5'- cGCaagGGGGAgcugcugaUCUACauGGACGggUCCGGGg -3' miRNA: 3'- -CGg--CCCCU--------AGAUGgcCCUGU--AGGCCU- -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 68764 | 0.66 | 0.843086 |
Target: 5'- gGCCGaacGGGGcCUGcCCGGGugG-CCGGu -3' miRNA: 3'- -CGGC---CCCUaGAU-GGCCCugUaGGCCu -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 46532 | 0.66 | 0.843086 |
Target: 5'- gGUCGGGGGggugGCCcGGAUGUCCaGAa -3' miRNA: 3'- -CGGCCCCUaga-UGGcCCUGUAGGcCU- -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 43022 | 0.66 | 0.843086 |
Target: 5'- cCCGGGGGga-GCgCGGGGCc-CCGGGc -3' miRNA: 3'- cGGCCCCUagaUG-GCCCUGuaGGCCU- -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 97617 | 0.66 | 0.841519 |
Target: 5'- aGCUGGGGcgacAUCgcgacgcgggccGCCGcGGACGUgCGGGa -3' miRNA: 3'- -CGGCCCC----UAGa-----------UGGC-CCUGUAgGCCU- -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 110927 | 0.66 | 0.83518 |
Target: 5'- cGCCGGcccgcGGUCaaaCGcGGACAUCCGGu -3' miRNA: 3'- -CGGCCc----CUAGaugGC-CCUGUAGGCCu -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 74879 | 0.66 | 0.83518 |
Target: 5'- uGCCGGuGGGUCgccACCGGGcGCGcuauucuaCCGGc -3' miRNA: 3'- -CGGCC-CCUAGa--UGGCCC-UGUa-------GGCCu -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 8859 | 0.66 | 0.83518 |
Target: 5'- gGCCGGGaGGUC-AUCGcGGACG--CGGAa -3' miRNA: 3'- -CGGCCC-CUAGaUGGC-CCUGUagGCCU- -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 16067 | 0.66 | 0.83518 |
Target: 5'- cGCUGGGGGcggcgggcgUCUGUgGGGGCAgacagcgcucCCGGAa -3' miRNA: 3'- -CGGCCCCU---------AGAUGgCCCUGUa---------GGCCU- -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 18218 | 0.66 | 0.830354 |
Target: 5'- cGCCGGGGGaCggugGgCGGGAaggguggaugguuUCCGGGg -3' miRNA: 3'- -CGGCCCCUaGa---UgGCCCUgu-----------AGGCCU- -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 18286 | 0.66 | 0.827102 |
Target: 5'- -gCGGGGGUauaaaaggugCUcGCCGGGAaggCCGGGg -3' miRNA: 3'- cgGCCCCUA----------GA-UGGCCCUguaGGCCU- -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 51538 | 0.66 | 0.826285 |
Target: 5'- cGCCGcguGGGAcgaguccgugcgcUCggcccugGCCcuGGGACAUCCGGc -3' miRNA: 3'- -CGGC---CCCU-------------AGa------UGG--CCCUGUAGGCCu -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 146476 | 0.66 | 0.818858 |
Target: 5'- cGCCGcGGG--CU-CCGGGGCcgggCCGGGc -3' miRNA: 3'- -CGGC-CCCuaGAuGGCCCUGua--GGCCU- -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 36312 | 0.66 | 0.818858 |
Target: 5'- cGgCGGGGcgCggGCCGGGg---CCGGGg -3' miRNA: 3'- -CgGCCCCuaGa-UGGCCCuguaGGCCU- -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 110321 | 0.66 | 0.815515 |
Target: 5'- gGCCGGGGAggucaugucggugCUGCUGGugGACA--CGGAu -3' miRNA: 3'- -CGGCCCCUa------------GAUGGCC--CUGUagGCCU- -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 106740 | 0.66 | 0.810455 |
Target: 5'- cGCCaGGGGGcCUccggagcCCGcGGGgAUCCGGAg -3' miRNA: 3'- -CGG-CCCCUaGAu------GGC-CCUgUAGGCCU- -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 56112 | 0.66 | 0.810455 |
Target: 5'- cGCCGuucGGAUCggGCCGaGGAUuuUCCGGu -3' miRNA: 3'- -CGGCc--CCUAGa-UGGC-CCUGu-AGGCCu -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 24664 | 0.66 | 0.810455 |
Target: 5'- cCUGGcGGccgUGCCGGGGCuggCCGGAg -3' miRNA: 3'- cGGCC-CCuagAUGGCCCUGua-GGCCU- -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 88752 | 0.66 | 0.801901 |
Target: 5'- aCCGGGGGcgcgcaUGCCGGccGCcUCCGGAa -3' miRNA: 3'- cGGCCCCUag----AUGGCCc-UGuAGGCCU- -5' |
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5136 | 5' | -58.9 | NC_001798.1 | + | 61462 | 0.66 | 0.801901 |
Target: 5'- cGCCGGGGc-CU-CCGGGcc--CCGGAg -3' miRNA: 3'- -CGGCCCCuaGAuGGCCCuguaGGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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