miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 3' -59.2 NC_001798.1 + 1530 0.66 0.809587
Target:  5'- cAGcGCCggGAgcacGGCGCGGCGGuacUCGCg -3'
miRNA:   3'- cUCcUGGa-CUa---CCGCGCCGCU---AGCGg -5'
5138 3' -59.2 NC_001798.1 + 2222 0.66 0.809587
Target:  5'- -cGGGCCcGAggcgcgcagcgGGCcgaagGCGGCGGgcgCGCCg -3'
miRNA:   3'- cuCCUGGaCUa----------CCG-----CGCCGCUa--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 14320 0.66 0.809587
Target:  5'- gGGGGugCgUGGggaGGCGU-GCGGUCGCg -3'
miRNA:   3'- -CUCCugG-ACUa--CCGCGcCGCUAGCGg -5'
5138 3' -59.2 NC_001798.1 + 15281 0.66 0.809587
Target:  5'- cGGGuuCCg---GGCGUGGCGGUgGUCg -3'
miRNA:   3'- cUCCu-GGacuaCCGCGCCGCUAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 64358 0.66 0.809587
Target:  5'- -cGGACCagGGUGGagGCGGgGAgCGUCc -3'
miRNA:   3'- cuCCUGGa-CUACCg-CGCCgCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 4411 0.66 0.800946
Target:  5'- cGGGGcGCC-GggGGuCGCGGCGAcaggcUgGCCa -3'
miRNA:   3'- -CUCC-UGGaCuaCC-GCGCCGCU-----AgCGG- -5'
5138 3' -59.2 NC_001798.1 + 15724 0.66 0.800946
Target:  5'- uGGGucgaCUGAgGGUGCcauGGCGGUgGCCg -3'
miRNA:   3'- cUCCug--GACUaCCGCG---CCGCUAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 26506 0.66 0.774185
Target:  5'- cGGGGACggUGcUGGcCGCGGCGggCGgCg -3'
miRNA:   3'- -CUCCUGg-ACuACC-GCGCCGCuaGCgG- -5'
5138 3' -59.2 NC_001798.1 + 55883 0.66 0.774185
Target:  5'- cGAGGACgaGggGGUacgagaaccaacGCGGCGAcgagCGCa -3'
miRNA:   3'- -CUCCUGgaCuaCCG------------CGCCGCUa---GCGg -5'
5138 3' -59.2 NC_001798.1 + 93067 0.66 0.774185
Target:  5'- cGAGGccaGCCagGGUaagccccagcggGGCGCGcGCGA-CGCCg -3'
miRNA:   3'- -CUCC---UGGa-CUA------------CCGCGC-CGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 94566 0.66 0.783237
Target:  5'- cGAGG-CCgccaaGGCGCGG--GUCGCCa -3'
miRNA:   3'- -CUCCuGGacua-CCGCGCCgcUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 115153 0.66 0.783237
Target:  5'- -cGGAUCUGGUGGCcauaGGCGAcagGCUg -3'
miRNA:   3'- cuCCUGGACUACCGcg--CCGCUag-CGG- -5'
5138 3' -59.2 NC_001798.1 + 85669 0.66 0.783237
Target:  5'- -cGGACC-GAcGGCGgGGUGcccgggCGCCa -3'
miRNA:   3'- cuCCUGGaCUaCCGCgCCGCua----GCGG- -5'
5138 3' -59.2 NC_001798.1 + 113642 0.66 0.783237
Target:  5'- -cGGcGCCgccaugugGGUGGCgGCGGCGGacugcuUUGCCg -3'
miRNA:   3'- cuCC-UGGa-------CUACCG-CGCCGCU------AGCGG- -5'
5138 3' -59.2 NC_001798.1 + 22388 0.66 0.789497
Target:  5'- gGGGGcggaaccccggcgaGCCgg--GGCGCGGCGG-CGUCg -3'
miRNA:   3'- -CUCC--------------UGGacuaCCGCGCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 129054 0.66 0.79216
Target:  5'- -cGGGCgCUGGUGGaguuaaauaGCGGCG-UUGUCu -3'
miRNA:   3'- cuCCUG-GACUACCg--------CGCCGCuAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 139688 0.66 0.79216
Target:  5'- cGAGGuCCUGGacuGCGUGGUcacGggCGCCa -3'
miRNA:   3'- -CUCCuGGACUac-CGCGCCG---CuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 153077 0.66 0.79216
Target:  5'- -cGGGCg-GAgcGGCGgGGCGG-CGCCg -3'
miRNA:   3'- cuCCUGgaCUa-CCGCgCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 87756 0.66 0.79216
Target:  5'- -cGGcCCUGAgccGCGCGGCcacGUCGUCc -3'
miRNA:   3'- cuCCuGGACUac-CGCGCCGc--UAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 20462 0.66 0.795691
Target:  5'- -uGGGCCUGGcgagcagagcgccggUGcGCGUGcGCGAUCcCCg -3'
miRNA:   3'- cuCCUGGACU---------------AC-CGCGC-CGCUAGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.