miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 3' -56.9 NC_001798.1 + 63440 0.66 0.881419
Target:  5'- aGCCGguacacGCGCgCCGCcucgGGCUUGGCGUGg- -3'
miRNA:   3'- cUGGU------UGUG-GGUG----CCGGACCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 25724 0.66 0.881419
Target:  5'- gGACCGGCGCCCccgacgucuCGGCgCUgGGCGc--- -3'
miRNA:   3'- -CUGGUUGUGGGu--------GCCG-GA-CCGCauac -5'
5141 3' -56.9 NC_001798.1 + 23803 0.66 0.881419
Target:  5'- aGCCGugGCCCGgGGCC-GGCc---- -3'
miRNA:   3'- cUGGUugUGGGUgCCGGaCCGcauac -5'
5141 3' -56.9 NC_001798.1 + 24748 0.66 0.880715
Target:  5'- cGCCGACgcgccccGCCUGCGcGCCUGGCu---- -3'
miRNA:   3'- cUGGUUG-------UGGGUGC-CGGACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 2508 0.66 0.874286
Target:  5'- gGGCgCGGCGgCCGCGGCggcGGCGUcgGc -3'
miRNA:   3'- -CUG-GUUGUgGGUGCCGga-CCGCAuaC- -5'
5141 3' -56.9 NC_001798.1 + 5367 0.66 0.874286
Target:  5'- -cCCGACGCCCGCGcGUCcgcguccgUGGCGg--- -3'
miRNA:   3'- cuGGUUGUGGGUGC-CGG--------ACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 128280 0.66 0.866938
Target:  5'- cGGCCGGCACCuCugGcGCCUGacGCGc--- -3'
miRNA:   3'- -CUGGUUGUGG-GugC-CGGAC--CGCauac -5'
5141 3' -56.9 NC_001798.1 + 130381 0.66 0.866938
Target:  5'- cGCguGCACCgaagCACGGCCaUGGCGa--- -3'
miRNA:   3'- cUGguUGUGG----GUGCCGG-ACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 66838 0.66 0.85938
Target:  5'- uGCCGGCGCCCA-GGCC-GGgGUu-- -3'
miRNA:   3'- cUGGUUGUGGGUgCCGGaCCgCAuac -5'
5141 3' -56.9 NC_001798.1 + 102365 0.66 0.85938
Target:  5'- cGGCCGccggaaGCCCACccGCCUGGCGg--- -3'
miRNA:   3'- -CUGGUug----UGGGUGc-CGGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 120359 0.66 0.85938
Target:  5'- cGCCAGCA-CCugGGCgaGGC-UGUGc -3'
miRNA:   3'- cUGGUUGUgGGugCCGgaCCGcAUAC- -5'
5141 3' -56.9 NC_001798.1 + 72306 0.66 0.85938
Target:  5'- uGAUCAGCAUgUACGcCCUGGCGg--- -3'
miRNA:   3'- -CUGGUUGUGgGUGCcGGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 4184 0.66 0.858612
Target:  5'- cGCCGAggguccCGCCCGCGGCguggucugcggcgCUGGCGg--- -3'
miRNA:   3'- cUGGUU------GUGGGUGCCG-------------GACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 96354 0.66 0.851616
Target:  5'- --gCGGCACCUGCGGCCggGGCu---- -3'
miRNA:   3'- cugGUUGUGGGUGCCGGa-CCGcauac -5'
5141 3' -56.9 NC_001798.1 + 1895 0.66 0.851616
Target:  5'- cGGCCAGCAgccccaggaacUCCACGGCgCcGGCGa--- -3'
miRNA:   3'- -CUGGUUGU-----------GGGUGCCG-GaCCGCauac -5'
5141 3' -56.9 NC_001798.1 + 30424 0.66 0.843654
Target:  5'- cGGCC-ACGCCCcCGGCCcGGCc---- -3'
miRNA:   3'- -CUGGuUGUGGGuGCCGGaCCGcauac -5'
5141 3' -56.9 NC_001798.1 + 95281 0.66 0.843654
Target:  5'- uGGCCuGC-CCCAgGGCCgGGUuuGUGUGc -3'
miRNA:   3'- -CUGGuUGuGGGUgCCGGaCCG--CAUAC- -5'
5141 3' -56.9 NC_001798.1 + 103021 0.67 0.835501
Target:  5'- cGGCCAGCGCgagcuCGGCCUcGGCGg--- -3'
miRNA:   3'- -CUGGUUGUGggu--GCCGGA-CCGCauac -5'
5141 3' -56.9 NC_001798.1 + 82054 0.67 0.835501
Target:  5'- cGCCGACACCCccccggggccccGCGGCC-GGCc---- -3'
miRNA:   3'- cUGGUUGUGGG------------UGCCGGaCCGcauac -5'
5141 3' -56.9 NC_001798.1 + 130029 0.67 0.827164
Target:  5'- cACCGGCuccCCCGCGGaCCuUGGCGcAUa -3'
miRNA:   3'- cUGGUUGu--GGGUGCC-GG-ACCGCaUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.