Results 1 - 20 of 78 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 63440 | 0.66 | 0.881419 |
Target: 5'- aGCCGguacacGCGCgCCGCcucgGGCUUGGCGUGg- -3' miRNA: 3'- cUGGU------UGUG-GGUG----CCGGACCGCAUac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 25724 | 0.66 | 0.881419 |
Target: 5'- gGACCGGCGCCCccgacgucuCGGCgCUgGGCGc--- -3' miRNA: 3'- -CUGGUUGUGGGu--------GCCG-GA-CCGCauac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 23803 | 0.66 | 0.881419 |
Target: 5'- aGCCGugGCCCGgGGCC-GGCc---- -3' miRNA: 3'- cUGGUugUGGGUgCCGGaCCGcauac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 24748 | 0.66 | 0.880715 |
Target: 5'- cGCCGACgcgccccGCCUGCGcGCCUGGCu---- -3' miRNA: 3'- cUGGUUG-------UGGGUGC-CGGACCGcauac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 2508 | 0.66 | 0.874286 |
Target: 5'- gGGCgCGGCGgCCGCGGCggcGGCGUcgGc -3' miRNA: 3'- -CUG-GUUGUgGGUGCCGga-CCGCAuaC- -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 5367 | 0.66 | 0.874286 |
Target: 5'- -cCCGACGCCCGCGcGUCcgcguccgUGGCGg--- -3' miRNA: 3'- cuGGUUGUGGGUGC-CGG--------ACCGCauac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 128280 | 0.66 | 0.866938 |
Target: 5'- cGGCCGGCACCuCugGcGCCUGacGCGc--- -3' miRNA: 3'- -CUGGUUGUGG-GugC-CGGAC--CGCauac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 130381 | 0.66 | 0.866938 |
Target: 5'- cGCguGCACCgaagCACGGCCaUGGCGa--- -3' miRNA: 3'- cUGguUGUGG----GUGCCGG-ACCGCauac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 66838 | 0.66 | 0.85938 |
Target: 5'- uGCCGGCGCCCA-GGCC-GGgGUu-- -3' miRNA: 3'- cUGGUUGUGGGUgCCGGaCCgCAuac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 102365 | 0.66 | 0.85938 |
Target: 5'- cGGCCGccggaaGCCCACccGCCUGGCGg--- -3' miRNA: 3'- -CUGGUug----UGGGUGc-CGGACCGCauac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 120359 | 0.66 | 0.85938 |
Target: 5'- cGCCAGCA-CCugGGCgaGGC-UGUGc -3' miRNA: 3'- cUGGUUGUgGGugCCGgaCCGcAUAC- -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 72306 | 0.66 | 0.85938 |
Target: 5'- uGAUCAGCAUgUACGcCCUGGCGg--- -3' miRNA: 3'- -CUGGUUGUGgGUGCcGGACCGCauac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 4184 | 0.66 | 0.858612 |
Target: 5'- cGCCGAggguccCGCCCGCGGCguggucugcggcgCUGGCGg--- -3' miRNA: 3'- cUGGUU------GUGGGUGCCG-------------GACCGCauac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 96354 | 0.66 | 0.851616 |
Target: 5'- --gCGGCACCUGCGGCCggGGCu---- -3' miRNA: 3'- cugGUUGUGGGUGCCGGa-CCGcauac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 1895 | 0.66 | 0.851616 |
Target: 5'- cGGCCAGCAgccccaggaacUCCACGGCgCcGGCGa--- -3' miRNA: 3'- -CUGGUUGU-----------GGGUGCCG-GaCCGCauac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 30424 | 0.66 | 0.843654 |
Target: 5'- cGGCC-ACGCCCcCGGCCcGGCc---- -3' miRNA: 3'- -CUGGuUGUGGGuGCCGGaCCGcauac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 95281 | 0.66 | 0.843654 |
Target: 5'- uGGCCuGC-CCCAgGGCCgGGUuuGUGUGc -3' miRNA: 3'- -CUGGuUGuGGGUgCCGGaCCG--CAUAC- -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 103021 | 0.67 | 0.835501 |
Target: 5'- cGGCCAGCGCgagcuCGGCCUcGGCGg--- -3' miRNA: 3'- -CUGGUUGUGggu--GCCGGA-CCGCauac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 82054 | 0.67 | 0.835501 |
Target: 5'- cGCCGACACCCccccggggccccGCGGCC-GGCc---- -3' miRNA: 3'- cUGGUUGUGGG------------UGCCGGaCCGcauac -5' |
|||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 130029 | 0.67 | 0.827164 |
Target: 5'- cACCGGCuccCCCGCGGaCCuUGGCGcAUa -3' miRNA: 3'- cUGGUUGu--GGGUGCC-GG-ACCGCaUAc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home