Results 1 - 20 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5141 | 5' | -55.8 | NC_001798.1 | + | 92330 | 0.66 | 0.930966 |
Target: 5'- cGGCGaCgCGGaCGUCGCCgUCGCGccCCu -3' miRNA: 3'- -CCGUaG-GCC-GCGGUGGaAGCGUuaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 18607 | 0.66 | 0.930966 |
Target: 5'- cGgGUCCGcGCGCCGucCCgccgUGCAuagGUCCg -3' miRNA: 3'- cCgUAGGC-CGCGGU--GGaa--GCGU---UAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 85291 | 0.66 | 0.930966 |
Target: 5'- gGGCGggggCCGGgGuCCGCC--CGCGGcCCg -3' miRNA: 3'- -CCGUa---GGCCgC-GGUGGaaGCGUUaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 15819 | 0.66 | 0.930966 |
Target: 5'- aGGcCAUgaGGCGCCGCCcggUUCGgGGggcCCg -3' miRNA: 3'- -CC-GUAggCCGCGGUGG---AAGCgUUa--GG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 24589 | 0.66 | 0.930455 |
Target: 5'- gGGCcgCgUGGCcguggagugccugGCCGCCUgccgCGgGAUCCu -3' miRNA: 3'- -CCGuaG-GCCG-------------CGGUGGAa---GCgUUAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 126267 | 0.66 | 0.925748 |
Target: 5'- gGGCGUCCGGaCGCC-Caa--GCGGcCCc -3' miRNA: 3'- -CCGUAGGCC-GCGGuGgaagCGUUaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 1735 | 0.66 | 0.925748 |
Target: 5'- cGGCgcagGUCCcGCGCCGCCggccagCGCAc--- -3' miRNA: 3'- -CCG----UAGGcCGCGGUGGaa----GCGUuagg -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 2107 | 0.66 | 0.925748 |
Target: 5'- cGCccCCGGCGCgGCCcgCGgccaGGUCCu -3' miRNA: 3'- cCGuaGGCCGCGgUGGaaGCg---UUAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 115875 | 0.66 | 0.925213 |
Target: 5'- uGGCG-CCGGCuaccauaGCCGCCgucCGCGgggcGUUCg -3' miRNA: 3'- -CCGUaGGCCG-------CGGUGGaa-GCGU----UAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 4596 | 0.66 | 0.924136 |
Target: 5'- aGGCGagCGG-GCCGCUUcuucuugcgcgccgUCGCGcUCCg -3' miRNA: 3'- -CCGUagGCCgCGGUGGA--------------AGCGUuAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 59817 | 0.66 | 0.920294 |
Target: 5'- aGGCcuUCUucuucuggGGCGCCGCggUCGCccgcGUCCg -3' miRNA: 3'- -CCGu-AGG--------CCGCGGUGgaAGCGu---UAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 105398 | 0.66 | 0.920294 |
Target: 5'- cGGCGuucUCCaGgGCCGCCgcggcCGCGGUgCg -3' miRNA: 3'- -CCGU---AGGcCgCGGUGGaa---GCGUUAgG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 109039 | 0.66 | 0.920294 |
Target: 5'- gGGCcUCCGGCcgGCC-CCagguaUCGCGucuuuGUCCu -3' miRNA: 3'- -CCGuAGGCCG--CGGuGGa----AGCGU-----UAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 26188 | 0.66 | 0.920294 |
Target: 5'- cGGCGcuggacggCCGGgcCGCCGCCUcgggCGCGGgcgacgCCa -3' miRNA: 3'- -CCGUa-------GGCC--GCGGUGGAa---GCGUUa-----GG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 26558 | 0.66 | 0.920294 |
Target: 5'- cGCGgggCUGGCcacGCCGCCgaggCGCGAgCCc -3' miRNA: 3'- cCGUa--GGCCG---CGGUGGaa--GCGUUaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 147167 | 0.66 | 0.916908 |
Target: 5'- gGGUAgccgcCCGGCGCCGggcggaaggcgucccCCgcccgGCGGUCCg -3' miRNA: 3'- -CCGUa----GGCCGCGGU---------------GGaag--CGUUAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 20473 | 0.66 | 0.914604 |
Target: 5'- aGCAgagcgCCGGUG-CGCgUgCGCGAUCCc -3' miRNA: 3'- cCGUa----GGCCGCgGUGgAaGCGUUAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 149683 | 0.66 | 0.914604 |
Target: 5'- gGGC--UCGGgGCCGCCcUCGCGuggcgcgucuUCCu -3' miRNA: 3'- -CCGuaGGCCgCGGUGGaAGCGUu---------AGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 135817 | 0.66 | 0.914604 |
Target: 5'- gGGCGUCauggaGGaCGCCugUgacCGCuuuGUCCu -3' miRNA: 3'- -CCGUAGg----CC-GCGGugGaa-GCGu--UAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 91963 | 0.66 | 0.914604 |
Target: 5'- gGGCccccccGUCCGGCGCgAUCcggUgGCGggCCa -3' miRNA: 3'- -CCG------UAGGCCGCGgUGGa--AgCGUuaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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