miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 5' -55.8 NC_001798.1 + 92330 0.66 0.930966
Target:  5'- cGGCGaCgCGGaCGUCGCCgUCGCGccCCu -3'
miRNA:   3'- -CCGUaG-GCC-GCGGUGGaAGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 18607 0.66 0.930966
Target:  5'- cGgGUCCGcGCGCCGucCCgccgUGCAuagGUCCg -3'
miRNA:   3'- cCgUAGGC-CGCGGU--GGaa--GCGU---UAGG- -5'
5141 5' -55.8 NC_001798.1 + 85291 0.66 0.930966
Target:  5'- gGGCGggggCCGGgGuCCGCC--CGCGGcCCg -3'
miRNA:   3'- -CCGUa---GGCCgC-GGUGGaaGCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 15819 0.66 0.930966
Target:  5'- aGGcCAUgaGGCGCCGCCcggUUCGgGGggcCCg -3'
miRNA:   3'- -CC-GUAggCCGCGGUGG---AAGCgUUa--GG- -5'
5141 5' -55.8 NC_001798.1 + 24589 0.66 0.930455
Target:  5'- gGGCcgCgUGGCcguggagugccugGCCGCCUgccgCGgGAUCCu -3'
miRNA:   3'- -CCGuaG-GCCG-------------CGGUGGAa---GCgUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 126267 0.66 0.925748
Target:  5'- gGGCGUCCGGaCGCC-Caa--GCGGcCCc -3'
miRNA:   3'- -CCGUAGGCC-GCGGuGgaagCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 1735 0.66 0.925748
Target:  5'- cGGCgcagGUCCcGCGCCGCCggccagCGCAc--- -3'
miRNA:   3'- -CCG----UAGGcCGCGGUGGaa----GCGUuagg -5'
5141 5' -55.8 NC_001798.1 + 2107 0.66 0.925748
Target:  5'- cGCccCCGGCGCgGCCcgCGgccaGGUCCu -3'
miRNA:   3'- cCGuaGGCCGCGgUGGaaGCg---UUAGG- -5'
5141 5' -55.8 NC_001798.1 + 115875 0.66 0.925213
Target:  5'- uGGCG-CCGGCuaccauaGCCGCCgucCGCGgggcGUUCg -3'
miRNA:   3'- -CCGUaGGCCG-------CGGUGGaa-GCGU----UAGG- -5'
5141 5' -55.8 NC_001798.1 + 4596 0.66 0.924136
Target:  5'- aGGCGagCGG-GCCGCUUcuucuugcgcgccgUCGCGcUCCg -3'
miRNA:   3'- -CCGUagGCCgCGGUGGA--------------AGCGUuAGG- -5'
5141 5' -55.8 NC_001798.1 + 59817 0.66 0.920294
Target:  5'- aGGCcuUCUucuucuggGGCGCCGCggUCGCccgcGUCCg -3'
miRNA:   3'- -CCGu-AGG--------CCGCGGUGgaAGCGu---UAGG- -5'
5141 5' -55.8 NC_001798.1 + 105398 0.66 0.920294
Target:  5'- cGGCGuucUCCaGgGCCGCCgcggcCGCGGUgCg -3'
miRNA:   3'- -CCGU---AGGcCgCGGUGGaa---GCGUUAgG- -5'
5141 5' -55.8 NC_001798.1 + 109039 0.66 0.920294
Target:  5'- gGGCcUCCGGCcgGCC-CCagguaUCGCGucuuuGUCCu -3'
miRNA:   3'- -CCGuAGGCCG--CGGuGGa----AGCGU-----UAGG- -5'
5141 5' -55.8 NC_001798.1 + 26188 0.66 0.920294
Target:  5'- cGGCGcuggacggCCGGgcCGCCGCCUcgggCGCGGgcgacgCCa -3'
miRNA:   3'- -CCGUa-------GGCC--GCGGUGGAa---GCGUUa-----GG- -5'
5141 5' -55.8 NC_001798.1 + 26558 0.66 0.920294
Target:  5'- cGCGgggCUGGCcacGCCGCCgaggCGCGAgCCc -3'
miRNA:   3'- cCGUa--GGCCG---CGGUGGaa--GCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 147167 0.66 0.916908
Target:  5'- gGGUAgccgcCCGGCGCCGggcggaaggcgucccCCgcccgGCGGUCCg -3'
miRNA:   3'- -CCGUa----GGCCGCGGU---------------GGaag--CGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 20473 0.66 0.914604
Target:  5'- aGCAgagcgCCGGUG-CGCgUgCGCGAUCCc -3'
miRNA:   3'- cCGUa----GGCCGCgGUGgAaGCGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 149683 0.66 0.914604
Target:  5'- gGGC--UCGGgGCCGCCcUCGCGuggcgcgucuUCCu -3'
miRNA:   3'- -CCGuaGGCCgCGGUGGaAGCGUu---------AGG- -5'
5141 5' -55.8 NC_001798.1 + 135817 0.66 0.914604
Target:  5'- gGGCGUCauggaGGaCGCCugUgacCGCuuuGUCCu -3'
miRNA:   3'- -CCGUAGg----CC-GCGGugGaa-GCGu--UAGG- -5'
5141 5' -55.8 NC_001798.1 + 91963 0.66 0.914604
Target:  5'- gGGCccccccGUCCGGCGCgAUCcggUgGCGggCCa -3'
miRNA:   3'- -CCG------UAGGCCGCGgUGGa--AgCGUuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.