miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5142 3' -57.3 NC_001798.1 + 131333 0.78 0.272847
Target:  5'- -cGCCGCCCgCgccccGGGCGCGACGUCGg -3'
miRNA:   3'- guUGGCGGGgGac---UUCGUGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 129659 0.69 0.70421
Target:  5'- ---gUGCCCCCcGAcguGCGCGugGUCa -3'
miRNA:   3'- guugGCGGGGGaCUu--CGUGCugCAGc -5'
5142 3' -57.3 NC_001798.1 + 129253 0.71 0.604046
Target:  5'- cCGACUGCCCCCUGcaaccGCACcugguGACGUUc -3'
miRNA:   3'- -GUUGGCGGGGGACuu---CGUG-----CUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 128425 0.69 0.694321
Target:  5'- aCGACCGCCUCCacgcugcggUGggGCGCGcaGgGUCc -3'
miRNA:   3'- -GUUGGCGGGGG---------ACuuCGUGC--UgCAGc -5'
5142 3' -57.3 NC_001798.1 + 127250 1.09 0.002246
Target:  5'- aCAACCGCCCCCUGAAGCACGACGUCGg -3'
miRNA:   3'- -GUUGGCGGGGGACUUCGUGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 120655 0.67 0.824236
Target:  5'- gGGCCuGCCCCCcgaUGAucuccuGCAUGAaggaGUCGg -3'
miRNA:   3'- gUUGG-CGGGGG---ACUu-----CGUGCUg---CAGC- -5'
5142 3' -57.3 NC_001798.1 + 117078 0.66 0.878245
Target:  5'- gCAGCaCGCCCgCgaGAGCGCGGCGg-- -3'
miRNA:   3'- -GUUG-GCGGGgGacUUCGUGCUGCagc -5'
5142 3' -57.3 NC_001798.1 + 116978 0.7 0.668396
Target:  5'- cCAACUuCCCCCcggcccugcgcgaccUGgcGCGCGACGUCc -3'
miRNA:   3'- -GUUGGcGGGGG---------------ACuuCGUGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 115836 0.71 0.604046
Target:  5'- ---aCGCCCggggCCUGGAGCuCGGCGUUGg -3'
miRNA:   3'- guugGCGGG----GGACUUCGuGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 112584 0.69 0.74309
Target:  5'- gAACUcCCCCCacugUGGAuCGCGGCGUCGg -3'
miRNA:   3'- gUUGGcGGGGG----ACUUcGUGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 111607 0.71 0.633217
Target:  5'- gGGCgGCCUCCUGGAGCcccggggGCGgcagacucGCGUCGg -3'
miRNA:   3'- gUUGgCGGGGGACUUCG-------UGC--------UGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 110916 0.67 0.840615
Target:  5'- cCAGCCGCCCCCgccGGCcCG-CGgUCa -3'
miRNA:   3'- -GUUGGCGGGGGacuUCGuGCuGC-AGc -5'
5142 3' -57.3 NC_001798.1 + 109432 0.66 0.878245
Target:  5'- cCGGCgGCCCgCCUGcGGCugGAgG-CGc -3'
miRNA:   3'- -GUUGgCGGG-GGACuUCGugCUgCaGC- -5'
5142 3' -57.3 NC_001798.1 + 106279 0.67 0.807181
Target:  5'- aCGACCuuguCCCCCgGAGGCGCGAgCGa-- -3'
miRNA:   3'- -GUUGGc---GGGGGaCUUCGUGCU-GCagc -5'
5142 3' -57.3 NC_001798.1 + 102400 0.69 0.733489
Target:  5'- gCGAUgGCCCCCaccAGCGCGGCGaUCu -3'
miRNA:   3'- -GUUGgCGGGGGacuUCGUGCUGC-AGc -5'
5142 3' -57.3 NC_001798.1 + 101957 0.67 0.824236
Target:  5'- gGACCGCCCCggauagagGAGGCcccggggggGCGAUGUgCGg -3'
miRNA:   3'- gUUGGCGGGGga------CUUCG---------UGCUGCA-GC- -5'
5142 3' -57.3 NC_001798.1 + 100310 0.74 0.459099
Target:  5'- aCAGCCGCCCCCUGGucagcuuucGGUACGAa---- -3'
miRNA:   3'- -GUUGGCGGGGGACU---------UCGUGCUgcagc -5'
5142 3' -57.3 NC_001798.1 + 98759 0.68 0.752598
Target:  5'- --cCCGCCCCCcGAcGCcaacGCGAcCGUCGc -3'
miRNA:   3'- guuGGCGGGGGaCUuCG----UGCU-GCAGC- -5'
5142 3' -57.3 NC_001798.1 + 95518 0.74 0.432253
Target:  5'- cCAcCCGCgCCCUGGAGCGCgggcauggcgaGugGUCGa -3'
miRNA:   3'- -GUuGGCGgGGGACUUCGUG-----------CugCAGC- -5'
5142 3' -57.3 NC_001798.1 + 95281 0.7 0.664386
Target:  5'- uGGCCuGCCCCagggccggguUUGuguGCGCGGCGUCGa -3'
miRNA:   3'- gUUGG-CGGGG----------GACuu-CGUGCUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.