miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 3' -45.5 NC_001798.1 + 36134 0.66 0.999993
Target:  5'- cGCGAucccgCCGGu---GGGGCGCGgCGGc -3'
miRNA:   3'- -CGUUuua--GGUUuuuuCCCUGCGC-GUC- -5'
5145 3' -45.5 NC_001798.1 + 66303 0.66 0.999993
Target:  5'- cGCAuccauUCCucAAAGGAGgccucccggguacGGAUGCGCAGg -3'
miRNA:   3'- -CGUuuu--AGG--UUUUUUC-------------CCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 48762 0.66 0.999993
Target:  5'- cGCGAGAUgUCAGuccucGGGGACGCaCGGc -3'
miRNA:   3'- -CGUUUUA-GGUUuuu--UCCCUGCGcGUC- -5'
5145 3' -45.5 NC_001798.1 + 100969 0.66 0.999993
Target:  5'- uCAAGAcuUCCGAccccGGGGGCGUggGCGGg -3'
miRNA:   3'- cGUUUU--AGGUUuuu-UCCCUGCG--CGUC- -5'
5145 3' -45.5 NC_001798.1 + 22147 0.66 0.999993
Target:  5'- gGCGGGggCCAAc---GGGA-GCGCGGg -3'
miRNA:   3'- -CGUUUuaGGUUuuuuCCCUgCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 93101 0.66 0.999993
Target:  5'- cGCGAcg-CCGGGAacAAGGGcccgGCGgGCGGg -3'
miRNA:   3'- -CGUUuuaGGUUUU--UUCCC----UGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 101827 0.66 0.999993
Target:  5'- gGUAAGcUCgCGGcgGGGGGAgGCGUGGg -3'
miRNA:   3'- -CGUUUuAG-GUUuuUUCCCUgCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 111884 0.66 0.999993
Target:  5'- aGCGAGcUCgGGAGccGGGGGAgGUGCGc -3'
miRNA:   3'- -CGUUUuAGgUUUU--UUCCCUgCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 147613 0.66 0.999993
Target:  5'- gGCGGGGagagGGGGGGGGGGCGgGCGGa -3'
miRNA:   3'- -CGUUUUagg-UUUUUUCCCUGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 7800 0.66 0.999993
Target:  5'- gGCGGGAgCCAGGGucGgacaGGAgGCGCAGc -3'
miRNA:   3'- -CGUUUUaGGUUUUuuC----CCUgCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 5615 0.66 0.99999
Target:  5'- cGCGGGcggcUCCGccccAAAGGGGGCGgggcCGCAGg -3'
miRNA:   3'- -CGUUUu---AGGUu---UUUUCCCUGC----GCGUC- -5'
5145 3' -45.5 NC_001798.1 + 34680 0.66 0.99999
Target:  5'- -aGGAAg--AGGGAAGGGGCGCgGCGGg -3'
miRNA:   3'- cgUUUUaggUUUUUUCCCUGCG-CGUC- -5'
5145 3' -45.5 NC_001798.1 + 136592 0.66 0.99999
Target:  5'- aCAcAGUCCGugcGGGGGACGgGCc- -3'
miRNA:   3'- cGUuUUAGGUuuuUUCCCUGCgCGuc -5'
5145 3' -45.5 NC_001798.1 + 146082 0.66 0.99999
Target:  5'- -aGGGGUCCGGGgcGAGGcGGGCGgGCGa -3'
miRNA:   3'- cgUUUUAGGUUU--UUUC-CCUGCgCGUc -5'
5145 3' -45.5 NC_001798.1 + 90375 0.66 0.99999
Target:  5'- uCGAGGuUCCGAAcgccGucGGGGgGCGCGGu -3'
miRNA:   3'- cGUUUU-AGGUUU----UuuCCCUgCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 88160 0.66 0.999986
Target:  5'- aCGGGAUCCGGuccuugauGGAcGGGaccuGCGCGCGGc -3'
miRNA:   3'- cGUUUUAGGUU--------UUUuCCC----UGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 52864 0.66 0.999986
Target:  5'- aGC-GAGUCCGugcu-GGGGC-CGCGGg -3'
miRNA:   3'- -CGuUUUAGGUuuuuuCCCUGcGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 27515 0.66 0.999986
Target:  5'- cGCGGGGgcgCCcgcGGGAAGGcagccccgcGGCGCGCGGg -3'
miRNA:   3'- -CGUUUUa--GGu--UUUUUCC---------CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 15444 0.66 0.999986
Target:  5'- cCGGAGUCguGGGgcGGGGGGuCGCGUGGg -3'
miRNA:   3'- cGUUUUAGguUUU--UUCCCU-GCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 137423 0.66 0.999985
Target:  5'- --cGGGUCCGGGAccGggacccgccccgcGGGGACGCGCu- -3'
miRNA:   3'- cguUUUAGGUUUU--U-------------UCCCUGCGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.