miRNA display CGI


Results 1 - 20 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 76918 0.66 0.628166
Target:  5'- gGCCGAuGcCGUCcgGGGCCCccccccggaagucacGgCGGCGCUg -3'
miRNA:   3'- gCGGCU-C-GCAG--UCCGGG---------------CgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 88660 0.66 0.624324
Target:  5'- uCGCCcauGGCcacCAGGCCCGCggccgUGAgGCCg -3'
miRNA:   3'- -GCGGc--UCGca-GUCCGGGCG-----GCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 28795 0.66 0.624324
Target:  5'- gCGgCGGcGCG-CGGGUCCuCCGcCGCCg -3'
miRNA:   3'- -GCgGCU-CGCaGUCCGGGcGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 111131 0.66 0.624324
Target:  5'- gCGCagcaGGGCGgcgCugucGGCCCGCgCGuCGCUc -3'
miRNA:   3'- -GCGg---CUCGCa--Gu---CCGGGCG-GCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 69304 0.66 0.624324
Target:  5'- gCGCCGGGgacgGUCA-GCCCucCCGcGCGCCg -3'
miRNA:   3'- -GCGGCUCg---CAGUcCGGGc-GGC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 66782 0.66 0.624324
Target:  5'- gGCCGcGGaaUCGGaGUCgGCCGACGCg -3'
miRNA:   3'- gCGGC-UCgcAGUC-CGGgCGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 83889 0.66 0.624324
Target:  5'- gGcCCGGGCGcUCcggaagaguGGUgCGCCGcCGCCa -3'
miRNA:   3'- gC-GGCUCGC-AGu--------CCGgGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 140202 0.66 0.624324
Target:  5'- gGCCGGugcugguguGCGUgGGG-UCGCCGAC-CCa -3'
miRNA:   3'- gCGGCU---------CGCAgUCCgGGCGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 24552 0.66 0.624324
Target:  5'- gCGCCG-GCGgugguGGCggCgGCCGGCGCg -3'
miRNA:   3'- -GCGGCuCGCagu--CCG--GgCGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 54855 0.66 0.624324
Target:  5'- cCGCCGc-CGcCuGGCCgGCCGAaaGCCa -3'
miRNA:   3'- -GCGGCucGCaGuCCGGgCGGCUg-CGG- -5'
5145 5' -63.7 NC_001798.1 + 78017 0.66 0.624324
Target:  5'- aCGCCGAcauGUuUCGGGUCgaCGCCGA-GCCc -3'
miRNA:   3'- -GCGGCU---CGcAGUCCGG--GCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 97642 0.66 0.614724
Target:  5'- cCGCCGcGGaCGUgCGGGagCGCCGGCGgCu -3'
miRNA:   3'- -GCGGC-UC-GCA-GUCCggGCGGCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 107640 0.66 0.614724
Target:  5'- cCGUCGGGUGUCGagacGCCCuGuuG-CGCCu -3'
miRNA:   3'- -GCGGCUCGCAGUc---CGGG-CggCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 134157 0.66 0.614724
Target:  5'- gGCCcccgGGGcCGUCGcGG-CCGCCcGCGCCg -3'
miRNA:   3'- gCGG----CUC-GCAGU-CCgGGCGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 103589 0.66 0.614724
Target:  5'- cCGCUc-GCG-CAuuUCCGCCGACGCCa -3'
miRNA:   3'- -GCGGcuCGCaGUccGGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 92165 0.66 0.614724
Target:  5'- uGCCGGGCcccCGuuCCUGCCGGuCGCCg -3'
miRNA:   3'- gCGGCUCGca-GUccGGGCGGCU-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 53647 0.66 0.614724
Target:  5'- aCGCCGccGCGguggCGGGgUUGCgCGACGCg -3'
miRNA:   3'- -GCGGCu-CGCa---GUCCgGGCG-GCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 142197 0.66 0.614724
Target:  5'- gGUCGAGCGcgcCAGGaCCGCC--UGCCc -3'
miRNA:   3'- gCGGCUCGCa--GUCCgGGCGGcuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 117967 0.66 0.613765
Target:  5'- cCGCUGccAGCGacgugCAGuuuaagcGCCCGCCGGggUGCCg -3'
miRNA:   3'- -GCGGC--UCGCa----GUC-------CGGGCGGCU--GCGG- -5'
5145 5' -63.7 NC_001798.1 + 43671 0.66 0.611846
Target:  5'- cCGCgGGGCuggggucgugggugGUCAcGGCCCGgagaugCGugGCCa -3'
miRNA:   3'- -GCGgCUCG--------------CAGU-CCGGGCg-----GCugCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.