miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5146 3' -58.7 NC_001798.1 + 43477 0.66 0.841893
Target:  5'- gGGGGCGGGCgugaGGGCCGccggggcauacgugcGCgCgCGCAGGu -3'
miRNA:   3'- -CCCUGCUCGg---UUUGGU---------------CG-GgGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 4338 0.66 0.838721
Target:  5'- -uGAUGAGUCAGaggcgGCCgAGCgCCgGCGGGg -3'
miRNA:   3'- ccCUGCUCGGUU-----UGG-UCG-GGgCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 5587 0.66 0.838721
Target:  5'- aGGGGCcGGCgAggUC-GCCCCGUuGGu -3'
miRNA:   3'- -CCCUGcUCGgUuuGGuCGGGGCGuCC- -5'
5146 3' -58.7 NC_001798.1 + 39197 0.66 0.838721
Target:  5'- cGGGucuCGGcGUCAAACCc-CCCCGCuuGGg -3'
miRNA:   3'- -CCCu--GCU-CGGUUUGGucGGGGCGu-CC- -5'
5146 3' -58.7 NC_001798.1 + 131025 0.66 0.838721
Target:  5'- aGGcGACGGGCCGcauCCAGCgcgcgCUCGUAGc -3'
miRNA:   3'- -CC-CUGCUCGGUuu-GGUCG-----GGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 111085 0.66 0.838721
Target:  5'- cGGGCGAGaCGGACCc-CCCCGggguCAGGc -3'
miRNA:   3'- cCCUGCUCgGUUUGGucGGGGC----GUCC- -5'
5146 3' -58.7 NC_001798.1 + 117515 0.66 0.838721
Target:  5'- cGGGAaaccggcugGGGCCGGcCCAGCCCCuccCGGu -3'
miRNA:   3'- -CCCUg--------CUCGGUUuGGUCGGGGc--GUCc -5'
5146 3' -58.7 NC_001798.1 + 124077 0.66 0.838721
Target:  5'- cGGGAgGAGgCGGcGCCugcGCCCCGaCGGc -3'
miRNA:   3'- -CCCUgCUCgGUU-UGGu--CGGGGC-GUCc -5'
5146 3' -58.7 NC_001798.1 + 17809 0.66 0.837125
Target:  5'- cGGGAUGAGCgcuccguggaucgCGAAucCCAGCCCgGUcaccaguuuugccAGGg -3'
miRNA:   3'- -CCCUGCUCG-------------GUUU--GGUCGGGgCG-------------UCC- -5'
5146 3' -58.7 NC_001798.1 + 78997 0.66 0.836324
Target:  5'- aGGGguuccgcgccaugcACGAGCa--GCUgcgcGCCCUGCAGGa -3'
miRNA:   3'- -CCC--------------UGCUCGguuUGGu---CGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 4411 0.66 0.836324
Target:  5'- cGGGGCGccgggGGUCGcggcgacaggcuGGCCAugggguccggguacGCCCCGCGGa -3'
miRNA:   3'- -CCCUGC-----UCGGU------------UUGGU--------------CGGGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 8792 0.66 0.830669
Target:  5'- cGGGACGGGCgAGGCCgcgggguaaagcGGCaCCgacgCGCuGGa -3'
miRNA:   3'- -CCCUGCUCGgUUUGG------------UCG-GG----GCGuCC- -5'
5146 3' -58.7 NC_001798.1 + 20364 0.66 0.830669
Target:  5'- cGGGCGGGuUCGGGgCGGCa-CGCAGGa -3'
miRNA:   3'- cCCUGCUC-GGUUUgGUCGggGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 25612 0.66 0.830669
Target:  5'- gGGGGCGGGCCccccccggaguGGuccGCCgAGCgCgGCGGGc -3'
miRNA:   3'- -CCCUGCUCGG-----------UU---UGG-UCGgGgCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 36316 0.66 0.830669
Target:  5'- gGGGcGCGGGCCgGGGCCGgGgCUCGCuGGu -3'
miRNA:   3'- -CCC-UGCUCGG-UUUGGU-CgGGGCGuCC- -5'
5146 3' -58.7 NC_001798.1 + 46482 0.66 0.830669
Target:  5'- gGGGACGGcGCCAacugcggaAACCGGU---GCAGGg -3'
miRNA:   3'- -CCCUGCU-CGGU--------UUGGUCGgggCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 71984 0.66 0.830669
Target:  5'- gGGGACGcgcugagGGCCAcgugcaacgcugccuACCuGCCCCGCc-- -3'
miRNA:   3'- -CCCUGC-------UCGGUu--------------UGGuCGGGGCGucc -5'
5146 3' -58.7 NC_001798.1 + 83967 0.66 0.830669
Target:  5'- cGGcGACGGGCgaGGGCCuGCUCgGCGGc -3'
miRNA:   3'- -CC-CUGCUCGg-UUUGGuCGGGgCGUCc -5'
5146 3' -58.7 NC_001798.1 + 139292 0.66 0.830669
Target:  5'- gGGGGCGcauagcGCCGcgucGCC-GCCCCGCGu- -3'
miRNA:   3'- -CCCUGCu-----CGGUu---UGGuCGGGGCGUcc -5'
5146 3' -58.7 NC_001798.1 + 150622 0.66 0.830669
Target:  5'- gGGGGCuccuGGGCCGcgcggGGCU-GUCUCGCGGGg -3'
miRNA:   3'- -CCCUG----CUCGGU-----UUGGuCGGGGCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.