miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5147 3' -63.5 NC_001798.1 + 52782 0.65 0.595013
Target:  5'- gCCCCGGGC-GCCcgugagcGGGacggcagacCCCGCCu---- -3'
miRNA:   3'- -GGGGCCCGuCGG-------CCC---------GGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 68779 0.65 0.595013
Target:  5'- gCCCGGGUggccgguguguguGGCCuccugGGGUCCGCUg---- -3'
miRNA:   3'- gGGGCCCG-------------UCGG-----CCCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 134462 0.66 0.58627
Target:  5'- aCCCCGGcGCgcgguuGGCgUGGGCgcgccuggCCGCCAUUc- -3'
miRNA:   3'- -GGGGCC-CG------UCG-GCCCG--------GGCGGUAAau -5'
5147 3' -63.5 NC_001798.1 + 127125 0.66 0.58627
Target:  5'- cCCCCGGGgGuuUGGgauGCCCGCCGc--- -3'
miRNA:   3'- -GGGGCCCgUcgGCC---CGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 86093 0.66 0.58627
Target:  5'- gCCCCGGcuGCGcGCCGccgcggacGCCCGCCGc--- -3'
miRNA:   3'- -GGGGCC--CGU-CGGCc-------CGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 21796 0.66 0.58627
Target:  5'- cCCCCGu----CCGGGCCCGCCu---- -3'
miRNA:   3'- -GGGGCccgucGGCCCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 152361 0.66 0.58627
Target:  5'- uCUCCGGGUcuccuccucccGCCGGGC-CGCCGc--- -3'
miRNA:   3'- -GGGGCCCGu----------CGGCCCGgGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 84602 0.66 0.576584
Target:  5'- gUCCCGGu--GCCGGuGcCCCGCCGa--- -3'
miRNA:   3'- -GGGGCCcguCGGCC-C-GGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 48366 0.66 0.576584
Target:  5'- gCCCgGGGCcGCCccgcgGGGCgugCCGCCGc--- -3'
miRNA:   3'- -GGGgCCCGuCGG-----CCCG---GGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 70582 0.66 0.576584
Target:  5'- gCCCUGGG--GCCGGugcgcGUCCGCCAg--- -3'
miRNA:   3'- -GGGGCCCguCGGCC-----CGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 21842 0.66 0.576584
Target:  5'- gCCCCGGGCAgggcGCCaGuGCUCGCa----- -3'
miRNA:   3'- -GGGGCCCGU----CGGcC-CGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 21979 0.66 0.576584
Target:  5'- gCCCCGGGCAgggcGCCaGcGCUCGCa----- -3'
miRNA:   3'- -GGGGCCCGU----CGGcC-CGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 23922 0.66 0.576584
Target:  5'- gCCUCGGGCGccCCGGcGCCCGUg----- -3'
miRNA:   3'- -GGGGCCCGUc-GGCC-CGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 73973 0.66 0.576584
Target:  5'- gCCgCGGGCu-CCGGGC-CGCCGc--- -3'
miRNA:   3'- -GGgGCCCGucGGCCCGgGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 149468 0.66 0.576584
Target:  5'- cUCCaCGcGGgGGCCGcGGCCCGCa----- -3'
miRNA:   3'- -GGG-GC-CCgUCGGC-CCGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 35013 0.66 0.576584
Target:  5'- aCCUcGGCGGCCaagccccGGCCCGCCc---- -3'
miRNA:   3'- gGGGcCCGUCGGc------CCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 59788 0.66 0.576584
Target:  5'- aCgCGGGCGGuacCCGGGCCUgGCCc---- -3'
miRNA:   3'- gGgGCCCGUC---GGCCCGGG-CGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 146637 0.66 0.566935
Target:  5'- cCCCCGcgggcauccGGCGGCCGGccccacGCCCuuCCAUUa- -3'
miRNA:   3'- -GGGGC---------CCGUCGGCC------CGGGc-GGUAAau -5'
5147 3' -63.5 NC_001798.1 + 134359 0.66 0.566935
Target:  5'- ---aGGGCGucGUgGGGCCCGCCGg--- -3'
miRNA:   3'- ggggCCCGU--CGgCCCGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 96915 0.66 0.566935
Target:  5'- gCCgCCGGGCuGUCGGacgccGCCCGCgCGc--- -3'
miRNA:   3'- -GG-GGCCCGuCGGCC-----CGGGCG-GUaaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.