miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5149 5' -55.2 NC_001798.1 + 132081 0.66 0.950157
Target:  5'- uUUCGGcGCGccguuGUCUguuucucccgCGCCUGGGGCCCGa -3'
miRNA:   3'- -AGGUUaUGC-----UAGA----------GUGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 108389 0.66 0.950157
Target:  5'- aCCAcgGCcgaGUUUC-CUCGGGACCCc -3'
miRNA:   3'- aGGUuaUGc--UAGAGuGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 150490 0.66 0.950157
Target:  5'- cCCGAcgacugugGCaGAcCUCccccCCCGGGGCCCGa -3'
miRNA:   3'- aGGUUa-------UG-CUaGAGu---GGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 84006 0.66 0.945915
Target:  5'- aUCCGccgcGUGCGAacggCgUC-CUCGGGGCCCa -3'
miRNA:   3'- -AGGU----UAUGCUa---G-AGuGGGCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 9432 0.66 0.945915
Target:  5'- cUCCGG-AgGGUCcUGCCacaGGGACCCGu -3'
miRNA:   3'- -AGGUUaUgCUAGaGUGGg--CCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 154097 0.66 0.945915
Target:  5'- gCCGGggcGCGGcCggCGCCgGGGACCCc -3'
miRNA:   3'- aGGUUa--UGCUaGa-GUGGgCCCUGGGc -5'
5149 5' -55.2 NC_001798.1 + 102775 0.66 0.945915
Target:  5'- cUCGcgGCGGgggaugugUCauggCACCCGGGGCgCCGg -3'
miRNA:   3'- aGGUuaUGCU--------AGa---GUGGGCCCUG-GGC- -5'
5149 5' -55.2 NC_001798.1 + 59780 0.66 0.945915
Target:  5'- uUCCGGgaacGCGggCggUACCCGGG-CCUGg -3'
miRNA:   3'- -AGGUUa---UGCuaGa-GUGGGCCCuGGGC- -5'
5149 5' -55.2 NC_001798.1 + 29004 0.66 0.945915
Target:  5'- gCCAAccGCGcgC-CGCCgCGcGGGCCCGg -3'
miRNA:   3'- aGGUUa-UGCuaGaGUGG-GC-CCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 69145 0.66 0.941441
Target:  5'- gCCAGUcgcuCGGUCUgcCGgCCGGGcggaGCCCGa -3'
miRNA:   3'- aGGUUAu---GCUAGA--GUgGGCCC----UGGGC- -5'
5149 5' -55.2 NC_001798.1 + 14545 0.66 0.941441
Target:  5'- gCCAAaaguUGCGcAUCUCGagggcCCCGGGACaCGu -3'
miRNA:   3'- aGGUU----AUGC-UAGAGU-----GGGCCCUGgGC- -5'
5149 5' -55.2 NC_001798.1 + 32355 0.66 0.941441
Target:  5'- gCCAcgcggaggGCGGcCccgaGCCCGGGGCCCGc -3'
miRNA:   3'- aGGUua------UGCUaGag--UGGGCCCUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 62261 0.66 0.941441
Target:  5'- cCCGAgcCGAUCccaggccCGCCgGGcGGCCCGg -3'
miRNA:   3'- aGGUUauGCUAGa------GUGGgCC-CUGGGC- -5'
5149 5' -55.2 NC_001798.1 + 51138 0.66 0.941441
Target:  5'- gCCGGgaggcccGCGGUCaC-CCCGGGuCCCGa -3'
miRNA:   3'- aGGUUa------UGCUAGaGuGGGCCCuGGGC- -5'
5149 5' -55.2 NC_001798.1 + 102237 0.66 0.939587
Target:  5'- cUCGggGCGGgcCUCGCCCGGGuaauacgggaaguCCCGg -3'
miRNA:   3'- aGGUuaUGCUa-GAGUGGGCCCu------------GGGC- -5'
5149 5' -55.2 NC_001798.1 + 128931 0.66 0.936735
Target:  5'- cCCGgcGUGCGcuacuUCgCGCCCGGGcgcguuccggGCCCGg -3'
miRNA:   3'- aGGU--UAUGCu----AGaGUGGGCCC----------UGGGC- -5'
5149 5' -55.2 NC_001798.1 + 69883 0.66 0.936735
Target:  5'- cCCAcc-CGAcagCACCCGGG-CCCGa -3'
miRNA:   3'- aGGUuauGCUagaGUGGGCCCuGGGC- -5'
5149 5' -55.2 NC_001798.1 + 7369 0.66 0.936251
Target:  5'- uUCC---ACGAUCUCccagagaACCCaGGGuCCCGc -3'
miRNA:   3'- -AGGuuaUGCUAGAG-------UGGG-CCCuGGGC- -5'
5149 5' -55.2 NC_001798.1 + 39038 0.67 0.926618
Target:  5'- gCCA--GCG-UCUCAUCCGcGGACgCCa -3'
miRNA:   3'- aGGUuaUGCuAGAGUGGGC-CCUG-GGc -5'
5149 5' -55.2 NC_001798.1 + 91490 0.67 0.920652
Target:  5'- gCCGAUGuucccccCGGcUCUUACCgGcGGACCCGc -3'
miRNA:   3'- aGGUUAU-------GCU-AGAGUGGgC-CCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.