miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 3' -51.9 NC_001798.1 + 130965 0.66 0.987493
Target:  5'- cACGCGCAGaCGUuuccggcgAUuAGCGUgGCGUGUGg -3'
miRNA:   3'- -UGUGUGUC-GCA--------UAuUCGCG-UGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 121630 0.66 0.987493
Target:  5'- gAUACGCGGCcgac-GGCGCGCGccucaUGCGc -3'
miRNA:   3'- -UGUGUGUCGcauauUCGCGUGC-----ACGC- -5'
5150 3' -51.9 NC_001798.1 + 25043 0.66 0.987493
Target:  5'- cCGCGCcGCGgg-AGGCGCGCaaGCGc -3'
miRNA:   3'- uGUGUGuCGCauaUUCGCGUGcaCGC- -5'
5150 3' -51.9 NC_001798.1 + 106663 0.66 0.987493
Target:  5'- aGCACGCGccuGCGUucggucAGGCuGCuCGUGCGa -3'
miRNA:   3'- -UGUGUGU---CGCAua----UUCG-CGuGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 123163 0.66 0.986521
Target:  5'- aACAcCGCGGCGUAccucAGCcucgcagaccccgucGCGCGUGCc -3'
miRNA:   3'- -UGU-GUGUCGCAUau--UCG---------------CGUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 153664 0.66 0.985841
Target:  5'- cCGCGCGGCGcGUccGCGgGCGgggacGCGg -3'
miRNA:   3'- uGUGUGUCGCaUAuuCGCgUGCa----CGC- -5'
5150 3' -51.9 NC_001798.1 + 1760 0.66 0.985841
Target:  5'- aGCGCACGGCGcac---UGCACG-GCGg -3'
miRNA:   3'- -UGUGUGUCGCauauucGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 134467 0.66 0.985841
Target:  5'- gGCGCGCGGUugGcGUGGGCGCGCcugGCc -3'
miRNA:   3'- -UGUGUGUCG--CaUAUUCGCGUGca-CGc -5'
5150 3' -51.9 NC_001798.1 + 9831 0.66 0.985841
Target:  5'- cACGCACAG-GUAgAGGCcgGCGUGCu -3'
miRNA:   3'- -UGUGUGUCgCAUaUUCGcgUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 80398 0.66 0.984772
Target:  5'- cCugGCGGCGgugagcguccucGGGCGCAUGUGUc -3'
miRNA:   3'- uGugUGUCGCaua---------UUCGCGUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 96939 0.66 0.984026
Target:  5'- cGCGCGCgAGCGcucUGUGugcuggaccaGGCGCugGcGCGg -3'
miRNA:   3'- -UGUGUG-UCGC---AUAU----------UCGCGugCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 142140 0.66 0.984026
Target:  5'- -gACGCGGCacagguGGUGCACGUGUu -3'
miRNA:   3'- ugUGUGUCGcauau-UCGCGUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 22342 0.66 0.984026
Target:  5'- gACGCGCgGGCGUcgGGGCGgggcCGCGcauaaUGCGg -3'
miRNA:   3'- -UGUGUG-UCGCAuaUUCGC----GUGC-----ACGC- -5'
5150 3' -51.9 NC_001798.1 + 138670 0.66 0.98204
Target:  5'- uGCACGCGGuCGUAUuccGCcauGCGCGUGg- -3'
miRNA:   3'- -UGUGUGUC-GCAUAuu-CG---CGUGCACgc -5'
5150 3' -51.9 NC_001798.1 + 39458 0.66 0.98204
Target:  5'- aGCGCcauCAGCGgaggggGGGCcugGCGCGUGCc -3'
miRNA:   3'- -UGUGu--GUCGCaua---UUCG---CGUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 124995 0.66 0.98204
Target:  5'- -aGCACGGCGgccagaaaGUAGGU-CGCGUGCa -3'
miRNA:   3'- ugUGUGUCGCa-------UAUUCGcGUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 103157 0.66 0.98204
Target:  5'- gGCGCACAGgGccacguGCGCAaacaggGUGCGg -3'
miRNA:   3'- -UGUGUGUCgCauauu-CGCGUg-----CACGC- -5'
5150 3' -51.9 NC_001798.1 + 43956 0.66 0.98204
Target:  5'- gGCACugAGgGUGUcgGGGCGUggguCGUGgGg -3'
miRNA:   3'- -UGUGugUCgCAUA--UUCGCGu---GCACgC- -5'
5150 3' -51.9 NC_001798.1 + 17138 0.66 0.98204
Target:  5'- -uGCGCGGUG---AGGCGCgauuccGCGUGCGu -3'
miRNA:   3'- ugUGUGUCGCauaUUCGCG------UGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 110227 0.66 0.981832
Target:  5'- gGCACGC-GCGggagauUGAGCcgaagcgGCugGUGCGc -3'
miRNA:   3'- -UGUGUGuCGCau----AUUCG-------CGugCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.