miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 93086 0.66 0.722874
Target:  5'- cCCCagcGGGGCGCGCGCgACGCcgggaacaaggGCCCg-- -3'
miRNA:   3'- -GGGc--UCCUGCGCGUG-UGCG-----------UGGGggg -5'
5150 5' -61.9 NC_001798.1 + 86266 0.66 0.722874
Target:  5'- gCCGGGGGCGCGg--GCGCACCg--- -3'
miRNA:   3'- gGGCUCCUGCGCgugUGCGUGGgggg -5'
5150 5' -61.9 NC_001798.1 + 94404 0.66 0.722874
Target:  5'- cUCgGAGGGgGCGgcUAUcUGCGCCCCCa -3'
miRNA:   3'- -GGgCUCCUgCGC--GUGuGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 85833 0.66 0.722874
Target:  5'- -gCGGGGGCGgGCGggggcucgggaACGCaACCCUCCc -3'
miRNA:   3'- ggGCUCCUGCgCGUg----------UGCG-UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 112199 0.66 0.722874
Target:  5'- uCCCGcAGGcCGCGCugGCGgAgCUCgCu -3'
miRNA:   3'- -GGGC-UCCuGCGCGugUGCgUgGGGgG- -5'
5150 5' -61.9 NC_001798.1 + 106585 0.66 0.722874
Target:  5'- aUCCu-GGugGCGUugAacuccCGCACCUCUCg -3'
miRNA:   3'- -GGGcuCCugCGCGugU-----GCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 111430 0.66 0.722874
Target:  5'- cCCCGAGaaACGC-C-CGCGgAgCCCCCa -3'
miRNA:   3'- -GGGCUCc-UGCGcGuGUGCgUgGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 150344 0.66 0.722874
Target:  5'- aCCG-GGGCGCGCgguGCGCGUCCaCCg -3'
miRNA:   3'- gGGCuCCUGCGCGug-UGCGUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 67300 0.66 0.72194
Target:  5'- gCCCGAGGuuccgccgaGCGC-CACGacggcgguucggcCAUCCCCg -3'
miRNA:   3'- -GGGCUCCug-------CGCGuGUGC-------------GUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 29538 0.66 0.721004
Target:  5'- cCCCGccGGGGCGCGCGgCuauugggggaauCGUaaauGCCgCCCCu -3'
miRNA:   3'- -GGGC--UCCUGCGCGU-Gu-----------GCG----UGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 154270 0.66 0.717257
Target:  5'- uCCCGGcuGGCGUGCGCagcccgggccguguuGCGgGCCCUCUu -3'
miRNA:   3'- -GGGCUc-CUGCGCGUG---------------UGCgUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 25705 0.66 0.713499
Target:  5'- gCCGccuGGGCGgGCAacuggaccgGCGCCCCCg -3'
miRNA:   3'- gGGCu--CCUGCgCGUgug------CGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 360 0.66 0.713499
Target:  5'- aCCCGcccGCcCGCACACGguUCCCCg -3'
miRNA:   3'- -GGGCuccUGcGCGUGUGCguGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 1986 0.66 0.713499
Target:  5'- gUCGGGGGCGCGguCcaguUGC-CCgCCCa -3'
miRNA:   3'- gGGCUCCUGCGCguGu---GCGuGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 3564 0.66 0.713499
Target:  5'- aCCCcAGGugGgGCACGgccCGCGCCaCgCUg -3'
miRNA:   3'- -GGGcUCCugCgCGUGU---GCGUGG-GgGG- -5'
5150 5' -61.9 NC_001798.1 + 28949 0.66 0.713499
Target:  5'- uCCgCGAGGGCcCG-GCGC-CGCCCCgCCg -3'
miRNA:   3'- -GG-GCUCCUGcGCgUGUGcGUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 150880 0.66 0.713499
Target:  5'- uUCCGcGGGuCGCccccGCAC-CGcCGCCCCCg -3'
miRNA:   3'- -GGGC-UCCuGCG----CGUGuGC-GUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 137433 0.66 0.712558
Target:  5'- aCCG-GGAcccgcccCGCGgGgACGCGCUCgCCCg -3'
miRNA:   3'- gGGCuCCU-------GCGCgUgUGCGUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 23888 0.66 0.707844
Target:  5'- gCCCGAGGcggaggagGCGCGgGCccgguucgaggccucGgGCGCCCCg- -3'
miRNA:   3'- -GGGCUCC--------UGCGCgUG---------------UgCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 148100 0.66 0.704062
Target:  5'- gCCGcuagggaaagguAGGcACGCGCGCGgugugucgacuUGCAUgCCCCg -3'
miRNA:   3'- gGGC------------UCC-UGCGCGUGU-----------GCGUGgGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.