miRNA display CGI


Results 21 - 40 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 149304 0.66 0.704062
Target:  5'- aCCgGAGGcCGUGgAaguccaGCGCGCCCaCCa -3'
miRNA:   3'- -GGgCUCCuGCGCgUg-----UGCGUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 149243 0.74 0.291838
Target:  5'- cCCgCGGGGGCgucgccggccgGCGCGgGCGCGCCCugcuCCCg -3'
miRNA:   3'- -GG-GCUCCUG-----------CGCGUgUGCGUGGG----GGG- -5'
5150 5' -61.9 NC_001798.1 + 148843 0.66 0.70122
Target:  5'- cCUCGGGGGugggggcggcuucuCGUGC-C-CGC-CCCCCCu -3'
miRNA:   3'- -GGGCUCCU--------------GCGCGuGuGCGuGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 148688 0.68 0.5983
Target:  5'- gCCGGccaGACGUGCugcucuGCACGaucggGCCCCCCu -3'
miRNA:   3'- gGGCUc--CUGCGCG------UGUGCg----UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 148640 0.66 0.685033
Target:  5'- cCCCGAGccaGGCGCccucccacuccuGCcCAC-CACCCCCa -3'
miRNA:   3'- -GGGCUC---CUGCG------------CGuGUGcGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 148506 0.72 0.376841
Target:  5'- cCCCGGGGGCagaggGCGUGCAUGCguugugauucaACCgCCCu -3'
miRNA:   3'- -GGGCUCCUG-----CGCGUGUGCG-----------UGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 148100 0.66 0.704062
Target:  5'- gCCGcuagggaaagguAGGcACGCGCGCGgugugucgacuUGCAUgCCCCg -3'
miRNA:   3'- gGGC------------UCC-UGCGCGUGU-----------GCGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 147907 0.68 0.559096
Target:  5'- uCCCGGGGGgGCagGCGCgggucgggcccguACGCccaccGCCCCCa -3'
miRNA:   3'- -GGGCUCCUgCG--CGUG-------------UGCG-----UGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 147501 0.66 0.681207
Target:  5'- cUCCGGGGggggggggcgccuGCGUGUgucucgugugagagaGCGCGCCCCUCg -3'
miRNA:   3'- -GGGCUCC-------------UGCGCGug-------------UGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 146879 0.7 0.442089
Target:  5'- cUCCGgagaAGGAaggcugcucCGCGCACcgGCGCGCCCUUCu -3'
miRNA:   3'- -GGGC----UCCU---------GCGCGUG--UGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 146827 0.72 0.346741
Target:  5'- aCCGGGGGCGCGgcagcaacgaaCGCAgGgGCCCgCCg -3'
miRNA:   3'- gGGCUCCUGCGC-----------GUGUgCgUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 145893 0.67 0.665849
Target:  5'- cCCCGAc--CGC-CGC-CGCGCCCCaCCg -3'
miRNA:   3'- -GGGCUccuGCGcGUGuGCGUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 145725 0.68 0.560045
Target:  5'- cCCCGGccccGGccCGCGCcccgccgccACACccacgGCACCCCCCc -3'
miRNA:   3'- -GGGCU----CCu-GCGCG---------UGUG-----CGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 145545 0.68 0.560045
Target:  5'- gCCCGGccgccCGCGuCGCGCcgGCGCCCCCUc -3'
miRNA:   3'- -GGGCUccu--GCGC-GUGUG--CGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 145499 0.72 0.364592
Target:  5'- cCCCGcccGGccgcCGCGCGCccccgcccggccgccGCGCGCCCCCg -3'
miRNA:   3'- -GGGCu--CCu---GCGCGUG---------------UGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 145436 0.72 0.364592
Target:  5'- cCCCGcccGGccgcCGCGCGCccccgcccggccgccGCGCGCCCCCg -3'
miRNA:   3'- -GGGCu--CCu---GCGCGUG---------------UGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 145386 0.8 0.116516
Target:  5'- aCCCGAgGGGCGaCGCGgggaaaGCGCGCCCCCg -3'
miRNA:   3'- -GGGCU-CCUGC-GCGUg-----UGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 144208 0.66 0.685033
Target:  5'- uCCgCGAGGAgGCGCGCGguuaggggguuCGCGagCUCCg -3'
miRNA:   3'- -GG-GCUCCUgCGCGUGU-----------GCGUggGGGG- -5'
5150 5' -61.9 NC_001798.1 + 143814 0.71 0.416864
Target:  5'- gCCCGGGcGGCGCGCggccaGC-CGUuggACCaCCCCg -3'
miRNA:   3'- -GGGCUC-CUGCGCG-----UGuGCG---UGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 142638 0.67 0.665849
Target:  5'- aCCCu-GGACGaCGCAgACcCAaCCCCCg -3'
miRNA:   3'- -GGGcuCCUGC-GCGUgUGcGUgGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.