miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5152 3' -62 NC_001798.1 + 2327 0.65 0.671713
Target:  5'- gGCCGGGcgccacGGCGCGgGgaagagcgggUGGuCCGUGa -3'
miRNA:   3'- aCGGCCU------CCGCGCgCaca-------ACC-GGCAC- -5'
5152 3' -62 NC_001798.1 + 97436 0.66 0.663874
Target:  5'- gUGCgacgaGGAGGCGCugcgccGCGUGcUGGCgCGg- -3'
miRNA:   3'- -ACGg----CCUCCGCG------CGCACaACCG-GCac -5'
5152 3' -62 NC_001798.1 + 150468 0.66 0.654053
Target:  5'- cGCgCGGGGGCGCGCGgcgc-GCCc-- -3'
miRNA:   3'- aCG-GCCUCCGCGCGCacaacCGGcac -5'
5152 3' -62 NC_001798.1 + 83633 0.66 0.654053
Target:  5'- gGCCGGAGGCGggaGCGgaggGGauGUGc -3'
miRNA:   3'- aCGGCCUCCGCg--CGCacaaCCggCAC- -5'
5152 3' -62 NC_001798.1 + 143813 0.66 0.644215
Target:  5'- gGcCCGGGcGGCGCGCGgccagccGUUGGaCCa-- -3'
miRNA:   3'- aC-GGCCU-CCGCGCGCa------CAACC-GGcac -5'
5152 3' -62 NC_001798.1 + 133444 0.66 0.644215
Target:  5'- cUGUCGGAGGacgcgguuaaGCGCGU---GGCCGa- -3'
miRNA:   3'- -ACGGCCUCCg---------CGCGCAcaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 72050 0.66 0.644215
Target:  5'- gUGCUGGccuGGGCGCGCGacUUcGGCC-UGg -3'
miRNA:   3'- -ACGGCC---UCCGCGCGCacAA-CCGGcAC- -5'
5152 3' -62 NC_001798.1 + 23816 0.66 0.643231
Target:  5'- gGCCGGccccccgcccccgGGGCGCGUGcUGUacggcgGGCUGg- -3'
miRNA:   3'- aCGGCC-------------UCCGCGCGC-ACAa-----CCGGCac -5'
5152 3' -62 NC_001798.1 + 3963 0.66 0.638308
Target:  5'- cGCCGGAGGcCGCgucgGCGUccagcucgaccgccgGggccgcccGGCCGUGa -3'
miRNA:   3'- aCGGCCUCC-GCG----CGCA---------------Caa------CCGGCAC- -5'
5152 3' -62 NC_001798.1 + 58998 0.66 0.638308
Target:  5'- cGCgGGGGGgGCGCGgaggaaccccaGGCCGg- -3'
miRNA:   3'- aCGgCCUCCgCGCGCacaa-------CCGGCac -5'
5152 3' -62 NC_001798.1 + 128246 0.66 0.638308
Target:  5'- cGCUGGAGGCGgccggcaugguggacCGCGggcucGGCCGg- -3'
miRNA:   3'- aCGGCCUCCGC---------------GCGCacaa-CCGGCac -5'
5152 3' -62 NC_001798.1 + 26525 0.66 0.634369
Target:  5'- gGCgGGcGGCG-GCGUGgaGGUgGUGg -3'
miRNA:   3'- aCGgCCuCCGCgCGCACaaCCGgCAC- -5'
5152 3' -62 NC_001798.1 + 2676 0.66 0.634369
Target:  5'- gGCgCGGAGGCggGCGCGgcgagcgaGUcGGCCGc- -3'
miRNA:   3'- aCG-GCCUCCG--CGCGCa-------CAaCCGGCac -5'
5152 3' -62 NC_001798.1 + 25608 0.66 0.634369
Target:  5'- cGCCGGGGGCGgGCcccccccggaGUGguccGCCGa- -3'
miRNA:   3'- aCGGCCUCCGCgCG----------CACaac-CGGCac -5'
5152 3' -62 NC_001798.1 + 30539 0.66 0.634369
Target:  5'- ---gGGGGGCGaCGUGUGU--GCCGUGu -3'
miRNA:   3'- acggCCUCCGC-GCGCACAacCGGCAC- -5'
5152 3' -62 NC_001798.1 + 111275 0.66 0.634369
Target:  5'- cGUCGGuucgucGGGCGCGgGaacGUacaGGCCGUGg -3'
miRNA:   3'- aCGGCC------UCCGCGCgCa--CAa--CCGGCAC- -5'
5152 3' -62 NC_001798.1 + 139331 0.66 0.634369
Target:  5'- cGCCGGcgcccGCGCGCGcUGUgcGGCCaUGg -3'
miRNA:   3'- aCGGCCuc---CGCGCGC-ACAa-CCGGcAC- -5'
5152 3' -62 NC_001798.1 + 28615 0.66 0.62846
Target:  5'- cGCCuGGcccgacggggguccuGGGCGCGCGaGcgGGCCGa- -3'
miRNA:   3'- aCGG-CC---------------UCCGCGCGCaCaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 6372 0.66 0.624522
Target:  5'- gGCCGGGGG-GC-CG-GggGGCCGg- -3'
miRNA:   3'- aCGGCCUCCgCGcGCaCaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 3009 0.66 0.624522
Target:  5'- gGCgCGGGGGCGCGgCG----GGCCGg- -3'
miRNA:   3'- aCG-GCCUCCGCGC-GCacaaCCGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.