miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5152 3' -62 NC_001798.1 + 120498 1.08 0.00098
Target:  5'- gUGCCGGAGGCGCGCGUGUUGGCCGUGa -3'
miRNA:   3'- -ACGGCCUCCGCGCGCACAACCGGCAC- -5'
5152 3' -62 NC_001798.1 + 111774 0.69 0.490019
Target:  5'- gGuuGGGGGCGCGgGUGc---CCGUGa -3'
miRNA:   3'- aCggCCUCCGCGCgCACaaccGGCAC- -5'
5152 3' -62 NC_001798.1 + 111643 0.67 0.575496
Target:  5'- cGUCGGGGGCGCucgGCGgGggGGCgGa- -3'
miRNA:   3'- aCGGCCUCCGCG---CGCaCaaCCGgCac -5'
5152 3' -62 NC_001798.1 + 111275 0.66 0.634369
Target:  5'- cGUCGGuucgucGGGCGCGgGaacGUacaGGCCGUGg -3'
miRNA:   3'- aCGGCC------UCCGCGCgCa--CAa--CCGGCAC- -5'
5152 3' -62 NC_001798.1 + 110992 0.66 0.624522
Target:  5'- cGCCcGucAGGCGCGCGguaugcgUGGCCGc- -3'
miRNA:   3'- aCGGcC--UCCGCGCGCaca----ACCGGCac -5'
5152 3' -62 NC_001798.1 + 110254 0.68 0.518885
Target:  5'- gGCUGGugcgcaccgaaaaccGGCGCGaccucggccuCGUGggGGCCGUGu -3'
miRNA:   3'- aCGGCCu--------------CCGCGC----------GCACaaCCGGCAC- -5'
5152 3' -62 NC_001798.1 + 109448 0.73 0.272557
Target:  5'- gGCUGGAGGCGCGCcucgGgcaucuggUGGCCGc- -3'
miRNA:   3'- aCGGCCUCCGCGCGca--Ca-------ACCGGCac -5'
5152 3' -62 NC_001798.1 + 109327 0.69 0.480867
Target:  5'- cUGCUGGGcuuuuuGGCccacucGCGCGUGcUGGCCGg- -3'
miRNA:   3'- -ACGGCCU------CCG------CGCGCACaACCGGCac -5'
5152 3' -62 NC_001798.1 + 100788 0.67 0.604849
Target:  5'- aGUgGGGGGCGgGUGUc--GGCCGUc -3'
miRNA:   3'- aCGgCCUCCGCgCGCAcaaCCGGCAc -5'
5152 3' -62 NC_001798.1 + 97478 0.7 0.402636
Target:  5'- gGCCGGcGGCGCGaccggGggGGCCGa- -3'
miRNA:   3'- aCGGCCuCCGCGCgca--CaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 97436 0.66 0.663874
Target:  5'- gUGCgacgaGGAGGCGCugcgccGCGUGcUGGCgCGg- -3'
miRNA:   3'- -ACGg----CCUCCGCG------CGCACaACCG-GCac -5'
5152 3' -62 NC_001798.1 + 97056 0.73 0.29166
Target:  5'- cUGCUGGAGGCGCaugaCGUGUUucaGGCCa-- -3'
miRNA:   3'- -ACGGCCUCCGCGc---GCACAA---CCGGcac -5'
5152 3' -62 NC_001798.1 + 90391 0.72 0.325794
Target:  5'- cGUCGGGGG-GCGCG-GUUgGGCCGg- -3'
miRNA:   3'- aCGGCCUCCgCGCGCaCAA-CCGGCac -5'
5152 3' -62 NC_001798.1 + 88750 0.73 0.272557
Target:  5'- gGaCCGGGGGCGCGCaUGccGGCCGc- -3'
miRNA:   3'- aC-GGCCUCCGCGCGcACaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 86265 0.67 0.575496
Target:  5'- gGCCGGGGGCGCGgGcGcaccGGCgGg- -3'
miRNA:   3'- aCGGCCUCCGCGCgCaCaa--CCGgCac -5'
5152 3' -62 NC_001798.1 + 83633 0.66 0.654053
Target:  5'- gGCCGGAGGCGggaGCGgaggGGauGUGc -3'
miRNA:   3'- aCGGCCUCCGCg--CGCacaaCCggCAC- -5'
5152 3' -62 NC_001798.1 + 79127 0.68 0.499252
Target:  5'- cGCCGa--GCGCGCGga--GGCCGUGg -3'
miRNA:   3'- aCGGCcucCGCGCGCacaaCCGGCAC- -5'
5152 3' -62 NC_001798.1 + 77359 0.67 0.575496
Target:  5'- gGCCcuGGAGGCGCGgGg---GGCCa-- -3'
miRNA:   3'- aCGG--CCUCCGCGCgCacaaCCGGcac -5'
5152 3' -62 NC_001798.1 + 72050 0.66 0.644215
Target:  5'- gUGCUGGccuGGGCGCGCGacUUcGGCC-UGg -3'
miRNA:   3'- -ACGGCC---UCCGCGCGCacAA-CCGGcAC- -5'
5152 3' -62 NC_001798.1 + 71122 0.66 0.622552
Target:  5'- cGCUGauGGCGCGCGUGcggacggacgcGGCCGUc -3'
miRNA:   3'- aCGGCcuCCGCGCGCACaa---------CCGGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.