miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5152 5' -56.1 NC_001798.1 + 88722 0.66 0.924779
Target:  5'- gUCCcCGUagaugaugcGCAUggaGUACGGaC-CGGGGGCg -3'
miRNA:   3'- -AGGuGCA---------UGUG---CAUGUC-GaGCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 87174 0.66 0.924779
Target:  5'- cCCGCGUGCAgCGcg-GGCgaCGGGcGGCu -3'
miRNA:   3'- aGGUGCAUGU-GCaugUCGa-GCCC-CCG- -5'
5152 5' -56.1 NC_001798.1 + 49992 0.66 0.924779
Target:  5'- gUCCgucauGCGggagcACGCGUAUAGC-CGcGGGCg -3'
miRNA:   3'- -AGG-----UGCa----UGUGCAUGUCGaGCcCCCG- -5'
5152 5' -56.1 NC_001798.1 + 3413 0.66 0.924779
Target:  5'- gCCGCGUucucGCGCGc-CAGCa-GGGGcGCg -3'
miRNA:   3'- aGGUGCA----UGUGCauGUCGagCCCC-CG- -5'
5152 5' -56.1 NC_001798.1 + 102538 0.66 0.924779
Target:  5'- cCCGCGgccggcaggccGCACGcgguCAGCggCGGGuGGCg -3'
miRNA:   3'- aGGUGCa----------UGUGCau--GUCGa-GCCC-CCG- -5'
5152 5' -56.1 NC_001798.1 + 139339 0.66 0.919302
Target:  5'- cCCGCGcGCGCuGUGCGGCcaUGGcGGCg -3'
miRNA:   3'- aGGUGCaUGUG-CAUGUCGa-GCCcCCG- -5'
5152 5' -56.1 NC_001798.1 + 59837 0.66 0.919302
Target:  5'- gCCGCGgucgccCGCGUcCGGCUCGGaGGa- -3'
miRNA:   3'- aGGUGCau----GUGCAuGUCGAGCC-CCcg -5'
5152 5' -56.1 NC_001798.1 + 52525 0.66 0.919302
Target:  5'- gCCGCGcGCGcCGUGCuGGCgacGGGGCu -3'
miRNA:   3'- aGGUGCaUGU-GCAUG-UCGagcCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 12701 0.66 0.913591
Target:  5'- cCCGgGuUGCugGg--GGCggCGGGGGCg -3'
miRNA:   3'- aGGUgC-AUGugCaugUCGa-GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 66753 0.66 0.913591
Target:  5'- gCCACGUcCGCcugggGUGCGGCggCGuGGGCc -3'
miRNA:   3'- aGGUGCAuGUG-----CAUGUCGa-GCcCCCG- -5'
5152 5' -56.1 NC_001798.1 + 112429 0.66 0.913591
Target:  5'- cUCCAUGgccggcgagcCACGggGCGGaCUUGGGGGg -3'
miRNA:   3'- -AGGUGCau--------GUGCa-UGUC-GAGCCCCCg -5'
5152 5' -56.1 NC_001798.1 + 22330 0.66 0.907648
Target:  5'- gCCACGgACGCGgACGcGCgggCGucGGGGCg -3'
miRNA:   3'- aGGUGCaUGUGCaUGU-CGa--GC--CCCCG- -5'
5152 5' -56.1 NC_001798.1 + 105363 0.66 0.907648
Target:  5'- cUCgAUGUcgACGgGCAGCUCGGcGGCc -3'
miRNA:   3'- -AGgUGCAugUGCaUGUCGAGCCcCCG- -5'
5152 5' -56.1 NC_001798.1 + 58694 0.66 0.907648
Target:  5'- gUCAgGgcCGCG-GCGGCgCGGGGGUc -3'
miRNA:   3'- aGGUgCauGUGCaUGUCGaGCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 17321 0.66 0.903971
Target:  5'- aCCugGg---UGUACGGauccccggccaggacCUCGGGGGCg -3'
miRNA:   3'- aGGugCauguGCAUGUC---------------GAGCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 3866 0.66 0.901474
Target:  5'- cCCAgCccGC-CGUACAGCacgcgcccCGGGGGCg -3'
miRNA:   3'- aGGU-GcaUGuGCAUGUCGa-------GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 56978 0.66 0.901474
Target:  5'- aCCGCGUGgGgGUGgaugguCAGCgaCGGaGGGCg -3'
miRNA:   3'- aGGUGCAUgUgCAU------GUCGa-GCC-CCCG- -5'
5152 5' -56.1 NC_001798.1 + 150352 0.66 0.901474
Target:  5'- -gCGCgGUGCGCGUccacCGGCaCGGcGGGCg -3'
miRNA:   3'- agGUG-CAUGUGCAu---GUCGaGCC-CCCG- -5'
5152 5' -56.1 NC_001798.1 + 44292 0.66 0.901474
Target:  5'- gCCGC-UGC-CGaUGCGGg-CGGGGGCg -3'
miRNA:   3'- aGGUGcAUGuGC-AUGUCgaGCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 96427 0.66 0.900844
Target:  5'- cUCCugGagUACGCGUggcgcgagggggaGCGGCUCcuGGGCc -3'
miRNA:   3'- -AGGugC--AUGUGCA-------------UGUCGAGccCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.