miRNA display CGI


Results 1 - 20 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 132169 0.66 0.469879
Target:  5'- gCCCCC-CCCGgacgccCCCCCGgACgCCAc- -3'
miRNA:   3'- aGGGGGcGGGU------GGGGGCgUGgGGUug -5'
5153 3' -66.4 NC_001798.1 + 114067 0.66 0.469879
Target:  5'- gCUCCUGCCCGcgacCCCCCGgguuaccgguaCGCCgCGGCc -3'
miRNA:   3'- aGGGGGCGGGU----GGGGGC-----------GUGGgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 27895 0.66 0.469879
Target:  5'- gCCCagCCGCCCGCCauguCCCGC-CgCCGGg -3'
miRNA:   3'- aGGG--GGCGGGUGG----GGGCGuGgGGUUg -5'
5153 3' -66.4 NC_001798.1 + 54236 0.66 0.469879
Target:  5'- uUCCCCaCGaugaCCGCCCCgaGCuggGCCCgGAUg -3'
miRNA:   3'- -AGGGG-GCg---GGUGGGGg-CG---UGGGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 74146 0.66 0.469879
Target:  5'- gUUCUUCGCCgGCCCCUGgGCCaugCGGCc -3'
miRNA:   3'- -AGGGGGCGGgUGGGGGCgUGGg--GUUG- -5'
5153 3' -66.4 NC_001798.1 + 96527 0.66 0.469879
Target:  5'- -gUCUgGCCCgACCCuguCCGUACCaCCAGCa -3'
miRNA:   3'- agGGGgCGGG-UGGG---GGCGUGG-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 98181 0.66 0.469879
Target:  5'- uUUCCggaaucaCGCCCACCCagCGCGCCgCCuGGCg -3'
miRNA:   3'- -AGGGg------GCGGGUGGGg-GCGUGG-GG-UUG- -5'
5153 3' -66.4 NC_001798.1 + 126405 0.66 0.469879
Target:  5'- gUCgCCGCUCGuCCCCCGagGCCCCc-- -3'
miRNA:   3'- aGGgGGCGGGU-GGGGGCg-UGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 131064 0.66 0.469879
Target:  5'- gUCaCCgCGCCCACCgCgGCguacacggccGCCgCCAGCa -3'
miRNA:   3'- -AG-GGgGCGGGUGGgGgCG----------UGG-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 3074 0.66 0.469879
Target:  5'- cCCUCCGCCagCGCCUCCaGgAUCCCGcgGCa -3'
miRNA:   3'- aGGGGGCGG--GUGGGGG-CgUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 54308 0.66 0.469879
Target:  5'- gCCCCgGaCCUGCuucggagcggaaCCCCGuCGCCCCAcuACg -3'
miRNA:   3'- aGGGGgC-GGGUG------------GGGGC-GUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 91499 0.66 0.469879
Target:  5'- cCCCCCGgCUcuuACCggcggaCCCGCGCCCgGGu -3'
miRNA:   3'- aGGGGGCgGG---UGG------GGGCGUGGGgUUg -5'
5153 3' -66.4 NC_001798.1 + 97009 0.66 0.469005
Target:  5'- gCCCgCCGCCCGCCgauagcucuucugUCCGCGaggaggCCGACg -3'
miRNA:   3'- aGGG-GGCGGGUGG-------------GGGCGUgg----GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 24990 0.66 0.461177
Target:  5'- cCCCCUGCUgGCCgacaCCGuCGCCgCGGCc -3'
miRNA:   3'- aGGGGGCGGgUGGg---GGC-GUGGgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 29524 0.66 0.461177
Target:  5'- uUCCCuCCcUCCGCCCCCGCcgggGCgCgCGGCu -3'
miRNA:   3'- -AGGG-GGcGGGUGGGGGCG----UG-GgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 24374 0.66 0.461177
Target:  5'- gCCCgCgggaaGCCCGCCgCCGCcgccGCCCCGu- -3'
miRNA:   3'- aGGGgG-----CGGGUGGgGGCG----UGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 110760 0.66 0.461177
Target:  5'- uUCCCCC-CCCAuagUCCCCGUAUaggcauaCAACg -3'
miRNA:   3'- -AGGGGGcGGGU---GGGGGCGUGgg-----GUUG- -5'
5153 3' -66.4 NC_001798.1 + 24924 0.66 0.461177
Target:  5'- gCCCgCGCCUgcugagcuccGCCgCCGCGCCgCCGc- -3'
miRNA:   3'- aGGGgGCGGG----------UGGgGGCGUGG-GGUug -5'
5153 3' -66.4 NC_001798.1 + 100157 0.66 0.452561
Target:  5'- aCCCCaaCGCCauCGCCUCCGCcACCgucggCCGGCg -3'
miRNA:   3'- aGGGG--GCGG--GUGGGGGCG-UGG-----GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 84428 0.66 0.452561
Target:  5'- --gCCCGacucCCCACCCCCGC-CgCgCAGCg -3'
miRNA:   3'- aggGGGC----GGGUGGGGGCGuG-GgGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.