miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5156 5' -49.9 NC_001798.1 + 97251 0.68 0.989492
Target:  5'- gGGCgGCGGGCGg-AGC-ACUUcgaUCGCg -3'
miRNA:   3'- aCCGgUGCCUGUagUUGaUGAA---AGCG- -5'
5156 5' -49.9 NC_001798.1 + 41875 0.68 0.989492
Target:  5'- cGGCCGgGGA--UCAGCUGCa---GCa -3'
miRNA:   3'- aCCGGUgCCUguAGUUGAUGaaagCG- -5'
5156 5' -49.9 NC_001798.1 + 54806 0.68 0.989492
Target:  5'- aUGcCCGCGGGCGUCGG--GCUUggCGCc -3'
miRNA:   3'- -ACcGGUGCCUGUAGUUgaUGAAa-GCG- -5'
5156 5' -49.9 NC_001798.1 + 83967 0.68 0.989492
Target:  5'- cGGCgACGGGCGagGGcCUGCUcggcggCGCg -3'
miRNA:   3'- aCCGgUGCCUGUagUU-GAUGAaa----GCG- -5'
5156 5' -49.9 NC_001798.1 + 84947 0.68 0.989492
Target:  5'- gGGUCugGGACcgCAGCg-----CGCa -3'
miRNA:   3'- aCCGGugCCUGuaGUUGaugaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 98792 0.68 0.989492
Target:  5'- cGGCCACGc----CAGCUGCgcgCGCa -3'
miRNA:   3'- aCCGGUGCcuguaGUUGAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 118927 0.68 0.989492
Target:  5'- aGGCgACGGACGUgCGcCUGgagUCGCu -3'
miRNA:   3'- aCCGgUGCCUGUA-GUuGAUgaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 136701 0.68 0.989492
Target:  5'- gGGCCAUguaccagugGGGCAg-GACUGCUcgUCGUc -3'
miRNA:   3'- aCCGGUG---------CCUGUagUUGAUGAa-AGCG- -5'
5156 5' -49.9 NC_001798.1 + 79253 0.68 0.988032
Target:  5'- gGGCCugcugGCGGAguUCGACgcgGCggcCGCg -3'
miRNA:   3'- aCCGG-----UGCCUguAGUUGa--UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 66226 0.68 0.988032
Target:  5'- gGGCCA-GGAuCAUUAGCUggGCcucgugUUCGCg -3'
miRNA:   3'- aCCGGUgCCU-GUAGUUGA--UGa-----AAGCG- -5'
5156 5' -49.9 NC_001798.1 + 49377 0.68 0.988032
Target:  5'- aGGCCAUGGcGCAguuuuuccgcggUgAGCUGCgggCGCg -3'
miRNA:   3'- aCCGGUGCC-UGU------------AgUUGAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 137176 0.68 0.986421
Target:  5'- cUGGUCGCGGuaaACcgCGGCUgGCgaUCGCu -3'
miRNA:   3'- -ACCGGUGCC---UGuaGUUGA-UGaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 12260 0.68 0.986421
Target:  5'- gGGCCGCGGACGaccaGGCcGgUggCGCa -3'
miRNA:   3'- aCCGGUGCCUGUag--UUGaUgAaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 110320 0.68 0.986251
Target:  5'- cGGCCGgGGAgGUCAugucgguGCUGCUggUGg -3'
miRNA:   3'- aCCGGUgCCUgUAGU-------UGAUGAaaGCg -5'
5156 5' -49.9 NC_001798.1 + 42829 0.68 0.984647
Target:  5'- gGGCCGCGGGaaaCAACaGCUgaacCGCc -3'
miRNA:   3'- aCCGGUGCCUguaGUUGaUGAaa--GCG- -5'
5156 5' -49.9 NC_001798.1 + 77721 0.68 0.984647
Target:  5'- gGGCCGCcGGCGUCGAg-GCgg-CGCu -3'
miRNA:   3'- aCCGGUGcCUGUAGUUgaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 106175 0.68 0.982703
Target:  5'- cGGCCGCGGugAUguugcCGGagauCUUUUGCg -3'
miRNA:   3'- aCCGGUGCCugUA-----GUUgau-GAAAGCG- -5'
5156 5' -49.9 NC_001798.1 + 79744 0.68 0.982703
Target:  5'- cGGUCACGGcCAUguACgUGCUgaccgUCGUg -3'
miRNA:   3'- aCCGGUGCCuGUAguUG-AUGAa----AGCG- -5'
5156 5' -49.9 NC_001798.1 + 73971 0.68 0.982703
Target:  5'- cGGCCGCGGGC-UCcgGGCcGCcg-CGCa -3'
miRNA:   3'- aCCGGUGCCUGuAG--UUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 83348 0.68 0.982499
Target:  5'- cGGCCGCGG-CGUCGcccgcgaacauagGCUGCggg-GCg -3'
miRNA:   3'- aCCGGUGCCuGUAGU-------------UGAUGaaagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.