miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 104689 0.66 0.93844
Target:  5'- cGCCGCGAacugcgcUuugggcagcuugucgUCGCGGUAGCG-GUACu -3'
miRNA:   3'- uCGGCGCU-------A---------------AGUGCCGUUGCuCGUGc -5'
5157 3' -55.4 NC_001798.1 + 25502 0.66 0.936996
Target:  5'- cGCUGCGccgCGCGGCGGCcugGAuGCGCc -3'
miRNA:   3'- uCGGCGCuaaGUGCCGUUG---CU-CGUGc -5'
5157 3' -55.4 NC_001798.1 + 32568 0.66 0.936996
Target:  5'- uGCUGCGGgcCGCGGCccccgcGugGAGC-CGc -3'
miRNA:   3'- uCGGCGCUaaGUGCCG------UugCUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 56125 0.66 0.936996
Target:  5'- gGGCCGagGAUUUucCGGUgggaaaAGCGAGUGCGg -3'
miRNA:   3'- -UCGGCg-CUAAGu-GCCG------UUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 79372 0.66 0.936996
Target:  5'- gGGCCgGCGGccagACGGgcGCGGGCGCGg -3'
miRNA:   3'- -UCGG-CGCUaag-UGCCguUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 90388 0.66 0.936996
Target:  5'- cGCCGuCGGggggCGCGGUugGGCcGGCGCGu -3'
miRNA:   3'- uCGGC-GCUaa--GUGCCG--UUGcUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 113131 0.66 0.936996
Target:  5'- aGGCCGCGug---UGGCGGgGAGgACGg -3'
miRNA:   3'- -UCGGCGCuaaguGCCGUUgCUCgUGC- -5'
5157 3' -55.4 NC_001798.1 + 106175 0.66 0.935529
Target:  5'- cGGCCGCGGUgauguugccggagaUCuuuuGCGG-GACGAGC-CGg -3'
miRNA:   3'- -UCGGCGCUA--------------AG----UGCCgUUGCUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 30922 0.66 0.934042
Target:  5'- uGGCCGaCGGUgaggGCGGCGggggucgggcgggggGCGGGCGgGg -3'
miRNA:   3'- -UCGGC-GCUAag--UGCCGU---------------UGCUCGUgC- -5'
5157 3' -55.4 NC_001798.1 + 75260 0.66 0.932024
Target:  5'- uGGCCGC----CACGGCGguccggcucGCGGcGCGCGa -3'
miRNA:   3'- -UCGGCGcuaaGUGCCGU---------UGCU-CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 154048 0.66 0.932024
Target:  5'- cGCCGgGGcgcggCACGGCuggAGCGccggGGCGCGg -3'
miRNA:   3'- uCGGCgCUaa---GUGCCG---UUGC----UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 29819 0.66 0.932024
Target:  5'- cGGCCGC----CGCGGCAGacccccGGCACGg -3'
miRNA:   3'- -UCGGCGcuaaGUGCCGUUgc----UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 32045 0.66 0.932024
Target:  5'- gGGCCGC---UCGCcccGGCGuccGCGGGCGCc -3'
miRNA:   3'- -UCGGCGcuaAGUG---CCGU---UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 41328 0.66 0.932024
Target:  5'- gGGCCuccaaGCaGUUUACGGCcuCGuGCACGu -3'
miRNA:   3'- -UCGG-----CGcUAAGUGCCGuuGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 116342 0.66 0.932024
Target:  5'- gAGCC-CGucuaCGCGGCGGCGuGCaACGu -3'
miRNA:   3'- -UCGGcGCuaa-GUGCCGUUGCuCG-UGC- -5'
5157 3' -55.4 NC_001798.1 + 117067 0.66 0.932024
Target:  5'- cAGcCCGUGGUgcagCACGcccGCGA-GAGCGCGg -3'
miRNA:   3'- -UC-GGCGCUAa---GUGC---CGUUgCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 137177 0.66 0.932024
Target:  5'- uGGUCGCGGUaaacCGCGGCuGGCGAuCGCu -3'
miRNA:   3'- -UCGGCGCUAa---GUGCCG-UUGCUcGUGc -5'
5157 3' -55.4 NC_001798.1 + 153044 0.66 0.932024
Target:  5'- cGGCgCGCGGUUgGcCGGCGccgcccccugggGCGGGCggaGCGg -3'
miRNA:   3'- -UCG-GCGCUAAgU-GCCGU------------UGCUCG---UGC- -5'
5157 3' -55.4 NC_001798.1 + 88134 0.66 0.926814
Target:  5'- -cUCGCGggUCugGGCcACGAuCACGu -3'
miRNA:   3'- ucGGCGCuaAGugCCGuUGCUcGUGC- -5'
5157 3' -55.4 NC_001798.1 + 60844 0.66 0.926814
Target:  5'- cGuCCGCucg-CGCGGCGACGGGauCGCGu -3'
miRNA:   3'- uC-GGCGcuaaGUGCCGUUGCUC--GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.