miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 3' -65.4 NC_001798.1 + 134435 0.69 0.331254
Target:  5'- uGGCCcuguCCGCGCGcgUCgCCgagcaCCCCGGCGc -3'
miRNA:   3'- cUCGG----GGCGCGCa-AG-GGa----GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 150699 0.69 0.310605
Target:  5'- -cGCgCCUGCGCGcgCCCcCCgCCGGCc -3'
miRNA:   3'- cuCG-GGGCGCGCaaGGGaGG-GGCCGu -5'
5158 3' -65.4 NC_001798.1 + 77262 0.69 0.310605
Target:  5'- cGGCCCUggGCGCGgccgCCCgcgaCCCGGCc -3'
miRNA:   3'- cUCGGGG--CGCGCaa--GGGag--GGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 34126 0.68 0.399105
Target:  5'- cGGGCccgaCCCGCGCcugCCC-CCCCGGgAa -3'
miRNA:   3'- -CUCG----GGGCGCGcaaGGGaGGGGCCgU- -5'
5158 3' -65.4 NC_001798.1 + 128163 0.68 0.391139
Target:  5'- cGGCCugCUGCGCGgcgUCCgCUCCCCucuGGCc -3'
miRNA:   3'- cUCGG--GGCGCGCa--AGG-GAGGGG---CCGu -5'
5158 3' -65.4 NC_001798.1 + 25430 0.68 0.391139
Target:  5'- uGGCCgCGCGCugcgccgCCCcgccCCCCGGCGg -3'
miRNA:   3'- cUCGGgGCGCGcaa----GGGa---GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 118391 0.68 0.383277
Target:  5'- gGGGCuCCUGCGCacgacagaCCUCCCCGuGCGu -3'
miRNA:   3'- -CUCG-GGGCGCGcaag----GGAGGGGC-CGU- -5'
5158 3' -65.4 NC_001798.1 + 48815 0.68 0.378611
Target:  5'- aGGGCCCCGgccuuuuucuguCGCGggucccggaUCCCUCCCCcccucuccgccgccgGGCGc -3'
miRNA:   3'- -CUCGGGGC------------GCGCa--------AGGGAGGGG---------------CCGU- -5'
5158 3' -65.4 NC_001798.1 + 29049 0.68 0.375521
Target:  5'- -cGCCCCGCGCcgg--CUUCCCGGUAu -3'
miRNA:   3'- cuCGGGGCGCGcaaggGAGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 73900 0.68 0.375521
Target:  5'- gGGGCCCCGCGaCGUgCUgUCCgCGGa- -3'
miRNA:   3'- -CUCGGGGCGC-GCAaGGgAGGgGCCgu -5'
5158 3' -65.4 NC_001798.1 + 150046 0.68 0.399105
Target:  5'- gGGGCCCgGCGCGgcgccgCCCU-CuuGGCc -3'
miRNA:   3'- -CUCGGGgCGCGCaa----GGGAgGggCCGu -5'
5158 3' -65.4 NC_001798.1 + 86179 0.68 0.399105
Target:  5'- cGGCCCCGCGUuuugcgcaGUUCgCCgagCCCCaGCc -3'
miRNA:   3'- cUCGGGGCGCG--------CAAG-GGa--GGGGcCGu -5'
5158 3' -65.4 NC_001798.1 + 201 0.68 0.399105
Target:  5'- -cGcCCCCGCGCGgcuuuuUUCCCgcgcccgcCCCCGcGCGg -3'
miRNA:   3'- cuC-GGGGCGCGC------AAGGGa-------GGGGC-CGU- -5'
5158 3' -65.4 NC_001798.1 + 154539 0.68 0.399105
Target:  5'- -cGcCCCCGCGCGgcuuuuUUCCCgcgcccgcCCCCGcGCGg -3'
miRNA:   3'- cuC-GGGGCGCGC------AAGGGa-------GGGGC-CGU- -5'
5158 3' -65.4 NC_001798.1 + 27923 0.68 0.364842
Target:  5'- gGGGuCCCCGcCGcCGgggUCCCggcgccggccgcgCCCCGGCGc -3'
miRNA:   3'- -CUC-GGGGC-GC-GCa--AGGGa------------GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 32580 0.68 0.352897
Target:  5'- cGGCCCC-CGCGUggagCCgccgcacccugCUCCCCGaGCAc -3'
miRNA:   3'- cUCGGGGcGCGCAa---GG-----------GAGGGGC-CGU- -5'
5158 3' -65.4 NC_001798.1 + 123947 0.68 0.375521
Target:  5'- gGGGCCUgGUG-Gca-CCUCCCCGGCGg -3'
miRNA:   3'- -CUCGGGgCGCgCaagGGAGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 1317 0.68 0.375521
Target:  5'- cAGCgCCCGCGCGcagaacUCCCgCCgCGGCc -3'
miRNA:   3'- cUCG-GGGCGCGCa-----AGGGaGGgGCCGu -5'
5158 3' -65.4 NC_001798.1 + 111596 0.67 0.449005
Target:  5'- gGGGCCCgGCGgGgcggccUCCUggagCCCCGGgGg -3'
miRNA:   3'- -CUCGGGgCGCgCa-----AGGGa---GGGGCCgU- -5'
5158 3' -65.4 NC_001798.1 + 94612 0.67 0.449005
Target:  5'- aAGCCCgacaaGCGCGUggacaUCCUCCUCGGa- -3'
miRNA:   3'- cUCGGGg----CGCGCAa----GGGAGGGGCCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.