miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 3' -65.4 NC_001798.1 + 95033 0.73 0.193102
Target:  5'- cGGGgCCCGCGCGcugauggacUCCCUcgacgcgcaCCCCGGCGc -3'
miRNA:   3'- -CUCgGGGCGCGCa--------AGGGA---------GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 94612 0.67 0.449005
Target:  5'- aAGCCCgacaaGCGCGUggacaUCCUCCUCGGa- -3'
miRNA:   3'- cUCGGGg----CGCGCAa----GGGAGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 93558 0.66 0.502163
Target:  5'- uGGCCaugCUGUGCGggUUCUCUCCGGCc -3'
miRNA:   3'- cUCGG---GGCGCGCaaGGGAGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 92985 0.66 0.475214
Target:  5'- -uGgCCCGCGCGgccgCCCa-CCUGGCGu -3'
miRNA:   3'- cuCgGGGCGCGCaa--GGGagGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 91580 0.66 0.501254
Target:  5'- gGGGCgCCGCG-GUUUCUUUuuaucggCCCGGCAg -3'
miRNA:   3'- -CUCGgGGCGCgCAAGGGAG-------GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 90407 0.67 0.423615
Target:  5'- uGGgCCgGCGCGUUCCCgcggCCgGGCu -3'
miRNA:   3'- cUCgGGgCGCGCAAGGGag--GGgCCGu -5'
5158 3' -65.4 NC_001798.1 + 89311 0.67 0.407174
Target:  5'- cGGUCUCGCGCGcgaCCUCCUCGcGCu -3'
miRNA:   3'- cUCGGGGCGCGCaagGGAGGGGC-CGu -5'
5158 3' -65.4 NC_001798.1 + 86179 0.68 0.399105
Target:  5'- cGGCCCCGCGUuuugcgcaGUUCgCCgagCCCCaGCc -3'
miRNA:   3'- cUCGGGGCGCG--------CAAG-GGa--GGGGcCGu -5'
5158 3' -65.4 NC_001798.1 + 82069 0.76 0.108113
Target:  5'- gGGGCCCCGCgGCcggCCCaCCCCGGCGc -3'
miRNA:   3'- -CUCGGGGCG-CGcaaGGGaGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 81778 0.66 0.461138
Target:  5'- cGGGCCuCCGCcccccccgaggggugGCGUccgccggcacUCCCcgCCCCGGUc -3'
miRNA:   3'- -CUCGG-GGCG---------------CGCA----------AGGGa-GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 81656 0.69 0.345573
Target:  5'- cGAGUCCCcccgcggaugccGCGC-UUCCUcCCCCGGCc -3'
miRNA:   3'- -CUCGGGG------------CGCGcAAGGGaGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 81456 0.66 0.493103
Target:  5'- cGGCCCCaCGCccaaUCCggCCCCGGCc -3'
miRNA:   3'- cUCGGGGcGCGca--AGGgaGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 80545 0.7 0.301308
Target:  5'- cGGCCCgGCGgGggggcgcgaggcgUCCCUCCCCgaGGCc -3'
miRNA:   3'- cUCGGGgCGCgCa------------AGGGAGGGG--CCGu -5'
5158 3' -65.4 NC_001798.1 + 78428 0.67 0.431984
Target:  5'- aGAGCCCCGUgaagaacacgGCGUacgccgaguaugUCgCCUUcgugaCCCGGCAg -3'
miRNA:   3'- -CUCGGGGCG----------CGCA------------AG-GGAG-----GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 77262 0.69 0.310605
Target:  5'- cGGCCCUggGCGCGgccgCCCgcgaCCCGGCc -3'
miRNA:   3'- cUCGGGG--CGCGCaa--GGGag--GGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 76014 0.71 0.232476
Target:  5'- aGGGCCCCGUGCccgCCCgCCCUGGg- -3'
miRNA:   3'- -CUCGGGGCGCGcaaGGGaGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 74743 0.66 0.484119
Target:  5'- gGGGaCCCCGCccGCGaagCCCUcggCCCCGGaCGc -3'
miRNA:   3'- -CUC-GGGGCG--CGCaa-GGGA---GGGGCC-GU- -5'
5158 3' -65.4 NC_001798.1 + 74132 0.7 0.297391
Target:  5'- -uGCCCCGCGCacacgUUCUUCgCCGGCc -3'
miRNA:   3'- cuCGGGGCGCGca---AGGGAGgGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 73900 0.68 0.375521
Target:  5'- gGGGCCCCGCGaCGUgCUgUCCgCGGa- -3'
miRNA:   3'- -CUCGGGGCGC-GCAaGGgAGGgGCCgu -5'
5158 3' -65.4 NC_001798.1 + 73218 0.66 0.493103
Target:  5'- -cGCCUCG-GCGUUucggCCUUCCgCCGGCc -3'
miRNA:   3'- cuCGGGGCgCGCAA----GGGAGG-GGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.