miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5159 3' -54.6 NC_001798.1 + 112772 0.66 0.958623
Target:  5'- cGCgGGGAGGGcggacgcacggauguGCGGCUC---GCGAACCa -3'
miRNA:   3'- -CG-UCCUCCU---------------CGUUGAGcucCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 36482 0.66 0.957134
Target:  5'- cCGGGAGGGggcgccggcGCGACgCG-GGCG-GCCg -3'
miRNA:   3'- cGUCCUCCU---------CGUUGaGCuCCGCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 149927 0.66 0.957134
Target:  5'- cGgAGGAGGAGgAGg-CGGcGGCGA-CCg -3'
miRNA:   3'- -CgUCCUCCUCgUUgaGCU-CCGCUuGG- -5'
5159 3' -54.6 NC_001798.1 + 49852 0.66 0.957134
Target:  5'- uGCGGcGGcGGAGgAACcCGGGGCGccCCu -3'
miRNA:   3'- -CGUC-CU-CCUCgUUGaGCUCCGCuuGG- -5'
5159 3' -54.6 NC_001798.1 + 2998 0.66 0.957134
Target:  5'- cGCGGGccccGGGcGCGGgggCGcGGCGGGCCg -3'
miRNA:   3'- -CGUCC----UCCuCGUUga-GCuCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 33400 0.66 0.954834
Target:  5'- aGUGGGAGGGcGCcuGGCUCGGGGaggGAggagggggggggucaGCCg -3'
miRNA:   3'- -CGUCCUCCU-CG--UUGAGCUCCg--CU---------------UGG- -5'
5159 3' -54.6 NC_001798.1 + 124505 0.66 0.953255
Target:  5'- gGCGGGGGGGG-GGCUgCG-GGCGugUCg -3'
miRNA:   3'- -CGUCCUCCUCgUUGA-GCuCCGCuuGG- -5'
5159 3' -54.6 NC_001798.1 + 10899 0.66 0.953255
Target:  5'- gGguGGcAGGAGCcgucGgUCGGGGCaGAUCg -3'
miRNA:   3'- -CguCC-UCCUCGu---UgAGCUCCGcUUGG- -5'
5159 3' -54.6 NC_001798.1 + 31341 0.66 0.953255
Target:  5'- gGCGGGGGGcGCGcgcagGCgcggCGgguGGGCGAagacGCCg -3'
miRNA:   3'- -CGUCCUCCuCGU-----UGa---GC---UCCGCU----UGG- -5'
5159 3' -54.6 NC_001798.1 + 107396 0.66 0.953255
Target:  5'- gGCGGGAGGuGGCGggaggACU-GGGGCcGGCUg -3'
miRNA:   3'- -CGUCCUCC-UCGU-----UGAgCUCCGcUUGG- -5'
5159 3' -54.6 NC_001798.1 + 147023 0.66 0.953255
Target:  5'- gGCGGGccGGGGCuuggccGC-CGAGGUGcGCCc -3'
miRNA:   3'- -CGUCCu-CCUCGu-----UGaGCUCCGCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 147910 0.66 0.953255
Target:  5'- --cGGGGGGGCAgGCgCGGGuCGGGCCc -3'
miRNA:   3'- cguCCUCCUCGU-UGaGCUCcGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 22736 0.66 0.953255
Target:  5'- cGCAGGGccgcGGGGCcgAGgUCGcgauGGCGGACg -3'
miRNA:   3'- -CGUCCU----CCUCG--UUgAGCu---CCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 97654 0.66 0.953255
Target:  5'- uGCGGGAGcGccGGCGGCUguacGCGGACCg -3'
miRNA:   3'- -CGUCCUC-C--UCGUUGAgcucCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 74514 0.66 0.952854
Target:  5'- uGCGGGGcgagaucGGGG-GGCUCGGGGCGcuCUu -3'
miRNA:   3'- -CGUCCU-------CCUCgUUGAGCUCCGCuuGG- -5'
5159 3' -54.6 NC_001798.1 + 14186 0.66 0.952046
Target:  5'- cGCGuGGGGGcAGCAcCUCGccaacucgcgacccAGGCGAcgcaggACCu -3'
miRNA:   3'- -CGU-CCUCC-UCGUuGAGC--------------UCCGCU------UGG- -5'
5159 3' -54.6 NC_001798.1 + 92625 0.66 0.949145
Target:  5'- aCGGGGGacgcgcugugcGAGCGGCUCGGacuGGaccCGGACCg -3'
miRNA:   3'- cGUCCUC-----------CUCGUUGAGCU---CC---GCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 72981 0.66 0.949145
Target:  5'- uCAGGAGGugauggcccacGCGAC-CGAGGaCGcGCCc -3'
miRNA:   3'- cGUCCUCCu----------CGUUGaGCUCC-GCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 49413 0.66 0.949145
Target:  5'- cGCGGGAGGAG-AGCUac---CGGACCg -3'
miRNA:   3'- -CGUCCUCCUCgUUGAgcuccGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 30759 0.66 0.949145
Target:  5'- cGCGuGGAGGccgaGGCGGC-CGu-GCGGGCCg -3'
miRNA:   3'- -CGU-CCUCC----UCGUUGaGCucCGCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.