miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5160 5' -60 NC_001798.1 + 85152 0.66 0.817525
Target:  5'- cGAGGcccuguGCGCCGAgcuccuggcGGCCugucacgugguaGGCGUGCCGc -3'
miRNA:   3'- cCUCC------UGUGGCU---------CCGG------------CUGCACGGCc -5'
5160 5' -60 NC_001798.1 + 76604 0.66 0.817525
Target:  5'- cGGGGGCGggcugucccCCGAGGCC-ACGcgcaugGCCGa -3'
miRNA:   3'- cCUCCUGU---------GGCUCCGGcUGCa-----CGGCc -5'
5160 5' -60 NC_001798.1 + 46674 0.66 0.817525
Target:  5'- -uGGGGC-CCGGGGCCGGauaccGCgGGg -3'
miRNA:   3'- ccUCCUGuGGCUCCGGCUgca--CGgCC- -5'
5160 5' -60 NC_001798.1 + 67740 0.66 0.817525
Target:  5'- -aAGGACGCaccGGCCGACGaaucacCCGGg -3'
miRNA:   3'- ccUCCUGUGgcuCCGGCUGCac----GGCC- -5'
5160 5' -60 NC_001798.1 + 38303 0.66 0.817525
Target:  5'- gGGGGGGCGaCGuGGgUGAUGU-CCGGg -3'
miRNA:   3'- -CCUCCUGUgGCuCCgGCUGCAcGGCC- -5'
5160 5' -60 NC_001798.1 + 120502 0.66 0.817525
Target:  5'- cGGAGG-CGCgCGuguuGGCCGugaacGCCGGg -3'
miRNA:   3'- -CCUCCuGUG-GCu---CCGGCugca-CGGCC- -5'
5160 5' -60 NC_001798.1 + 2273 0.66 0.816701
Target:  5'- cGGGGcGGCGCagcgcgcggccagCGAGGCCaGCGcGCgCGGg -3'
miRNA:   3'- -CCUC-CUGUG-------------GCUCCGGcUGCaCG-GCC- -5'
5160 5' -60 NC_001798.1 + 77429 0.66 0.809224
Target:  5'- -cAGGcGCGCCG-GGCCuGCGcccaGCCGGa -3'
miRNA:   3'- ccUCC-UGUGGCuCCGGcUGCa---CGGCC- -5'
5160 5' -60 NC_001798.1 + 11230 0.66 0.809224
Target:  5'- gGGGGGccgucgggccACugCGGGGCCGAgGacUGaCGGa -3'
miRNA:   3'- -CCUCC----------UGugGCUCCGGCUgC--ACgGCC- -5'
5160 5' -60 NC_001798.1 + 40123 0.66 0.809224
Target:  5'- -uAGGuCGCCGGGGCUGGgaUGgCGGg -3'
miRNA:   3'- ccUCCuGUGGCUCCGGCUgcACgGCC- -5'
5160 5' -60 NC_001798.1 + 45274 0.66 0.809224
Target:  5'- uGGGGGcCGCgGAcaagucGGCgGACGUGCuCGu -3'
miRNA:   3'- -CCUCCuGUGgCU------CCGgCUGCACG-GCc -5'
5160 5' -60 NC_001798.1 + 59002 0.66 0.809224
Target:  5'- gGGGGGGCGCgGAGGaaCCccaG-GCCGGu -3'
miRNA:   3'- -CCUCCUGUGgCUCC--GGcugCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 81428 0.66 0.809224
Target:  5'- uGGAGGA-GCUGGcGuCCGACGacGCCGGc -3'
miRNA:   3'- -CCUCCUgUGGCUcC-GGCUGCa-CGGCC- -5'
5160 5' -60 NC_001798.1 + 139058 0.66 0.809224
Target:  5'- cGGcuGGAgGCCGcGGGCCaccACGUGgCGGc -3'
miRNA:   3'- -CCu-CCUgUGGC-UCCGGc--UGCACgGCC- -5'
5160 5' -60 NC_001798.1 + 43589 0.66 0.809224
Target:  5'- --cGGAUguucaGCUG-GGCgCGcACGUGCCGGa -3'
miRNA:   3'- ccuCCUG-----UGGCuCCG-GC-UGCACGGCC- -5'
5160 5' -60 NC_001798.1 + 117673 0.66 0.800777
Target:  5'- cGGGGACG-CGcGGCCGGCGgcguguacGCgGGg -3'
miRNA:   3'- cCUCCUGUgGCuCCGGCUGCa-------CGgCC- -5'
5160 5' -60 NC_001798.1 + 74392 0.66 0.800777
Target:  5'- ---cGGC-CCgGGGGCCGugGcGCCGGc -3'
miRNA:   3'- ccucCUGuGG-CUCCGGCugCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 153771 0.66 0.800777
Target:  5'- aGGGGGCGCUGcGGCCcGCGcuccuUGCgCGGc -3'
miRNA:   3'- cCUCCUGUGGCuCCGGcUGC-----ACG-GCC- -5'
5160 5' -60 NC_001798.1 + 135224 0.66 0.800777
Target:  5'- cGGGGAgGCCG-GGCUGcCGgaaGcCCGGg -3'
miRNA:   3'- cCUCCUgUGGCuCCGGCuGCa--C-GGCC- -5'
5160 5' -60 NC_001798.1 + 101872 0.66 0.800777
Target:  5'- gGGGGGugGgCGugugcgggggaGGGCUGAUGUaGCgGGg -3'
miRNA:   3'- -CCUCCugUgGC-----------UCCGGCUGCA-CGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.