Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5161 | 3' | -52.6 | NC_001798.1 | + | 36419 | 0.69 | 0.924435 |
Target: 5'- cGGGCGggGcGGUGgg-GCGGggUCGGGGu -3' miRNA: 3'- -CUUGCuuC-CCGCacaCGUCa-AGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 66438 | 0.69 | 0.924435 |
Target: 5'- aGAUGAuAGGGCGUGUauGC-GUUgGGGGg -3' miRNA: 3'- cUUGCU-UCCCGCACA--CGuCAAgCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 98870 | 0.69 | 0.924435 |
Target: 5'- --cCGAcGGGCGccacggugGUGCAGUUUGAGc -3' miRNA: 3'- cuuGCUuCCCGCa-------CACGUCAAGCUCc -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 31340 | 0.69 | 0.929831 |
Target: 5'- cGGCGggGGGCGcGcGCAGgcgCGGcGGg -3' miRNA: 3'- cUUGCuuCCCGCaCaCGUCaa-GCU-CC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 56189 | 0.68 | 0.944538 |
Target: 5'- gGggUGggGuGGgGUGUGguGgguaCGGGGg -3' miRNA: 3'- -CuuGCuuC-CCgCACACguCaa--GCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 97531 | 0.68 | 0.957067 |
Target: 5'- aGGAgGggGGGCGgagGcGUGGcgCGGGGa -3' miRNA: 3'- -CUUgCuuCCCGCa--CaCGUCaaGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 33486 | 0.67 | 0.96751 |
Target: 5'- aGAGaGggGGGaaaGUGggGCGGgggCGAGGg -3' miRNA: 3'- -CUUgCuuCCCg--CACa-CGUCaa-GCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 138501 | 0.67 | 0.96751 |
Target: 5'- --cCGGAGGGCGUG-GCAcgcgacgaucUCGGGGc -3' miRNA: 3'- cuuGCUUCCCGCACaCGUca--------AGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 100978 | 0.67 | 0.970551 |
Target: 5'- --cCGAccccgGGGGCGUGgGCGGggaGGGGg -3' miRNA: 3'- cuuGCU-----UCCCGCACaCGUCaagCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 35386 | 0.67 | 0.971709 |
Target: 5'- aAugGAAGGGCGUGgggccggccgccggaUGCccg-CGGGGg -3' miRNA: 3'- cUugCUUCCCGCAC---------------ACGucaaGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 146040 | 0.66 | 0.976012 |
Target: 5'- --gUGggGGGCGUgGUGguGaaCGAuGGg -3' miRNA: 3'- cuuGCuuCCCGCA-CACguCaaGCU-CC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 34684 | 0.66 | 0.978446 |
Target: 5'- aGAGgGAAgGGGCGcG-GCGGgaCGGGGg -3' miRNA: 3'- -CUUgCUU-CCCGCaCaCGUCaaGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 31146 | 0.66 | 0.978446 |
Target: 5'- cGGCGcGGGGGCGgcgGUGCGGgggCGAc- -3' miRNA: 3'- cUUGC-UUCCCGCa--CACGUCaa-GCUcc -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 51012 | 0.66 | 0.978446 |
Target: 5'- aGGACGAgcccgAGGGCG-GUGgAGU-CGGGu -3' miRNA: 3'- -CUUGCU-----UCCCGCaCACgUCAaGCUCc -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 2538 | 0.66 | 0.978446 |
Target: 5'- gGGGCGggGGGCGcGgcccccGCGGga-GGGGc -3' miRNA: 3'- -CUUGCuuCCCGCaCa-----CGUCaagCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 12927 | 0.66 | 0.980037 |
Target: 5'- cGGCGAuuuuuaagcuguauAGGGCGacgGUGCgcuGGUuuUCGGGGa -3' miRNA: 3'- cUUGCU--------------UCCCGCa--CACG---UCA--AGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 16228 | 0.66 | 0.980692 |
Target: 5'- uGugGggGGGCG-GUGgGGc-CGGGGc -3' miRNA: 3'- cUugCuuCCCGCaCACgUCaaGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 85821 | 0.66 | 0.980692 |
Target: 5'- uGACGGgggGGGGCGgggGCGGg-CGGGGg -3' miRNA: 3'- cUUGCU---UCCCGCacaCGUCaaGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 23893 | 0.66 | 0.980692 |
Target: 5'- aGGCGGAGgaGGCGcGgGCccGGUUCGAGGc -3' miRNA: 3'- cUUGCUUC--CCGCaCaCG--UCAAGCUCC- -5' |
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5161 | 3' | -52.6 | NC_001798.1 | + | 144557 | 0.66 | 0.980692 |
Target: 5'- cGugGggGGGCGUucgaaAGggCGAGGa -3' miRNA: 3'- cUugCuuCCCGCAcacg-UCaaGCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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