miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 118013 0.66 0.68578
Target:  5'- gCUCGUgGaagaCCCGUG-CGGCCUGUuucaggaagccuACCCg -3'
miRNA:   3'- -GAGUAgC----GGGCGCuGCCGGGCG------------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 57581 0.66 0.68578
Target:  5'- -gCAUUGCUCGCGuuccCCCGCggGCCCa -3'
miRNA:   3'- gaGUAGCGGGCGCugccGGGCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 112762 0.66 0.68578
Target:  5'- gUCAUCaGCCCGCGGggagGGCggaCGCACg- -3'
miRNA:   3'- gAGUAG-CGGGCGCUg---CCGg--GCGUGgg -5'
5161 5' -62.4 NC_001798.1 + 60627 0.66 0.68578
Target:  5'- ----aCGCCgCG-GugGGUCCGC-CCCa -3'
miRNA:   3'- gaguaGCGG-GCgCugCCGGGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 67598 0.66 0.68578
Target:  5'- --uGUCGUUCG-GACGGagaCCGCGCuCCg -3'
miRNA:   3'- gagUAGCGGGCgCUGCCg--GGCGUG-GG- -5'
5161 5' -62.4 NC_001798.1 + 121610 0.66 0.68578
Target:  5'- gCUCGUccCGCCaaacacgcgauaCGCggccGACGGCgCGCGCCUc -3'
miRNA:   3'- -GAGUA--GCGG------------GCG----CUGCCGgGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 153013 0.66 0.68578
Target:  5'- --gGUCGCCgG-GGCGGaguCCGgGCCCg -3'
miRNA:   3'- gagUAGCGGgCgCUGCCg--GGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 1913 0.66 0.68578
Target:  5'- aCUCcacggCGCCgGCGAaGGCCaGguCCCg -3'
miRNA:   3'- -GAGua---GCGGgCGCUgCCGGgCguGGG- -5'
5161 5' -62.4 NC_001798.1 + 92497 0.66 0.68578
Target:  5'- uUCAcggCGgCCGCcACcuGGCCCccaGCACCCa -3'
miRNA:   3'- gAGUa--GCgGGCGcUG--CCGGG---CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 94021 0.66 0.68578
Target:  5'- aUUAUCGgcaaCCGCGA-GGCCCuGCACa- -3'
miRNA:   3'- gAGUAGCg---GGCGCUgCCGGG-CGUGgg -5'
5161 5' -62.4 NC_001798.1 + 26425 0.66 0.684821
Target:  5'- -aCG-CGCCCccgcuggugcugcGCGACgacgcggacgcgGGCCCGCcCCCg -3'
miRNA:   3'- gaGUaGCGGG-------------CGCUG------------CCGGGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 81614 0.66 0.684821
Target:  5'- -cCGUgGCCCcucGCGAcgacccaCGGCCCucgcCACCCa -3'
miRNA:   3'- gaGUAgCGGG---CGCU-------GCCGGGc---GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 98384 0.66 0.684821
Target:  5'- aUCGUCgagagcgGCCC-CGACGGCUgcauCGgACCCc -3'
miRNA:   3'- gAGUAG-------CGGGcGCUGCCGG----GCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 122494 0.66 0.682902
Target:  5'- -gCGUCGCuuucCCGCGcucgagggaccccuGCGccaCCCGCGCCCc -3'
miRNA:   3'- gaGUAGCG----GGCGC--------------UGCc--GGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 147899 0.66 0.682902
Target:  5'- gUCGUCGUUcccgggggggcaggCGCGGgucgGGCCCGUacGCCCa -3'
miRNA:   3'- gAGUAGCGG--------------GCGCUg---CCGGGCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 104748 0.66 0.676174
Target:  5'- uCUCGUCGCCgauuacCG-CGGCCagaCGCGCCa -3'
miRNA:   3'- -GAGUAGCGGgc----GCuGCCGG---GCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 86466 0.66 0.676174
Target:  5'- uUCGUgaGCCUGCuuCGGgCCGCggGCCCc -3'
miRNA:   3'- gAGUAg-CGGGCGcuGCCgGGCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 69526 0.66 0.676174
Target:  5'- -gCGUgGCCCGCGA--GCUCGCGCg- -3'
miRNA:   3'- gaGUAgCGGGCGCUgcCGGGCGUGgg -5'
5161 5' -62.4 NC_001798.1 + 33742 0.66 0.676174
Target:  5'- aCUCAccccacccCGCCCGC-ACaccuGCCCGCcacGCCCg -3'
miRNA:   3'- -GAGUa-------GCGGGCGcUGc---CGGGCG---UGGG- -5'
5161 5' -62.4 NC_001798.1 + 25398 0.66 0.676174
Target:  5'- cCUCAuguUCGaCCCGCGcgcgcuggccucGCuGGCCgCGCGCUg -3'
miRNA:   3'- -GAGU---AGC-GGGCGC------------UG-CCGG-GCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.