miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5162 3' -52.8 NC_001798.1 + 68783 0.66 0.980868
Target:  5'- --gGGUgGCCGGUGUGU---GUGGCCu -3'
miRNA:   3'- ccaCCG-CGGCCGUACAuaaUAUCGGc -5'
5162 3' -52.8 NC_001798.1 + 36042 0.66 0.980652
Target:  5'- gGGUGGCggcggugGUCGGCGUGcu-----GCCGg -3'
miRNA:   3'- -CCACCG-------CGGCCGUACauaauauCGGC- -5'
5162 3' -52.8 NC_001798.1 + 29599 0.66 0.980215
Target:  5'- --aGGCGCCGGguauaaggcagcccCGUGUGacggUcgGGCCGc -3'
miRNA:   3'- ccaCCGCGGCC--------------GUACAUa---AuaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 28663 0.66 0.976197
Target:  5'- cGGUuccGGCGCC-GCGUGgcggc-GGCCGa -3'
miRNA:   3'- -CCA---CCGCGGcCGUACauaauaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 113830 0.66 0.97357
Target:  5'- --aGGaCGCCGGCcgGUccUcgGGCCu -3'
miRNA:   3'- ccaCC-GCGGCCGuaCAuaAuaUCGGc -5'
5162 3' -52.8 NC_001798.1 + 3709 0.66 0.97357
Target:  5'- ---cGCGuCCGGCGUGUAcagcAGCCGc -3'
miRNA:   3'- ccacCGC-GGCCGUACAUaauaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 4366 0.66 0.97357
Target:  5'- cGGgggGcGCGCCGGCGgcgGUGgugGUGGUg- -3'
miRNA:   3'- -CCa--C-CGCGGCCGUa--CAUaa-UAUCGgc -5'
5162 3' -52.8 NC_001798.1 + 124373 0.66 0.97074
Target:  5'- gGGUGGCGCCucuGCGUucugucaucGUAUaccAGCCGc -3'
miRNA:   3'- -CCACCGCGGc--CGUA---------CAUAauaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 54580 0.67 0.967699
Target:  5'- --cGGCcgGCCGGCcacGUAUuacacgcaUAUGGCCGg -3'
miRNA:   3'- ccaCCG--CGGCCGua-CAUA--------AUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 65858 0.67 0.96444
Target:  5'- gGGUGGC-CUGGUA-GUG--GUGGCCu -3'
miRNA:   3'- -CCACCGcGGCCGUaCAUaaUAUCGGc -5'
5162 3' -52.8 NC_001798.1 + 125484 0.67 0.96444
Target:  5'- uGGUGGCGCUugGGCGUcgcg-GUGGCa- -3'
miRNA:   3'- -CCACCGCGG--CCGUAcauaaUAUCGgc -5'
5162 3' -52.8 NC_001798.1 + 120775 0.67 0.963419
Target:  5'- cGUGGCGuuGGUGUGcGUcaccacccgcggcaUGUGGUCGu -3'
miRNA:   3'- cCACCGCggCCGUACaUA--------------AUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 41378 0.67 0.960958
Target:  5'- -aUGGCGCCGGgG------AUGGCCGg -3'
miRNA:   3'- ccACCGCGGCCgUacauaaUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 124891 0.67 0.957247
Target:  5'- cGGUGGCGCgcUGGCGgaaGUGccgcacGGCCGu -3'
miRNA:   3'- -CCACCGCG--GCCGUa--CAUaaua--UCGGC- -5'
5162 3' -52.8 NC_001798.1 + 112400 0.67 0.953301
Target:  5'- cGGUGGUGCagGGUG-GUGgcAUAGCUGa -3'
miRNA:   3'- -CCACCGCGg-CCGUaCAUaaUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 128249 0.67 0.953301
Target:  5'- uGGaGGCgGCCGGCAUGguggaccgcgggcucGGCCGg -3'
miRNA:   3'- -CCaCCG-CGGCCGUACauaaua---------UCGGC- -5'
5162 3' -52.8 NC_001798.1 + 117566 0.67 0.95082
Target:  5'- aGGUGccgcggcGCGCCGGCAUGgaccacgggcaggauGCCGu -3'
miRNA:   3'- -CCAC-------CGCGGCCGUACauaauau--------CGGC- -5'
5162 3' -52.8 NC_001798.1 + 146122 0.67 0.949118
Target:  5'- uGGUGGCGgCGGCG-GUGgaa-AGCgGa -3'
miRNA:   3'- -CCACCGCgGCCGUaCAUaauaUCGgC- -5'
5162 3' -52.8 NC_001798.1 + 25998 0.67 0.949118
Target:  5'- -cUGGCcuCCGGCcgcGUGUUcgGGCCGg -3'
miRNA:   3'- ccACCGc-GGCCGua-CAUAAuaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 39552 0.68 0.944693
Target:  5'- gGGUGGCGCCGG----------GGCCGu -3'
miRNA:   3'- -CCACCGCGGCCguacauaauaUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.