miRNA display CGI


Results 1 - 20 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 111105 0.66 0.95598
Target:  5'- -gGGGUCAGGCGuuGCGaGUccacaaagcgcagcaGGGCGGCGc -3'
miRNA:   3'- cgCUCGGUCCGUu-UGC-CA---------------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 1752 0.66 0.954409
Target:  5'- cGCcGGCCAGcGCAcggcgcacugcACGGcGGGCAGCa -3'
miRNA:   3'- -CGcUCGGUC-CGUu----------UGCCaUUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 16050 0.66 0.954409
Target:  5'- aGCGAcGCguGGUAGGuCGcuggGGGCGGCGg -3'
miRNA:   3'- -CGCU-CGguCCGUUU-GCca--UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 27796 0.66 0.954409
Target:  5'- gGUGAguucGCUAGGCAAgcACGGacuGGCGGUu -3'
miRNA:   3'- -CGCU----CGGUCCGUU--UGCCau-UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 135257 0.66 0.954409
Target:  5'- gGCGGGCCuggaaAGGCuGGACGcgcuGGUGGCGg -3'
miRNA:   3'- -CGCUCGG-----UCCG-UUUGCcau-UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 151160 0.66 0.954409
Target:  5'- cCGuGCCGGGCcacgGGGgGGUGGGCgacagGGCGc -3'
miRNA:   3'- cGCuCGGUCCG----UUUgCCAUUCG-----UCGC- -5'
5165 3' -54.3 NC_001798.1 + 151614 0.66 0.954409
Target:  5'- cGgGGGCCGGGCcGGgGGcguGGCcGCGu -3'
miRNA:   3'- -CgCUCGGUCCGuUUgCCau-UCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 59462 0.66 0.954409
Target:  5'- cGCGuGcCCGGGC--GCGGUGAGgcguuCGGCc -3'
miRNA:   3'- -CGCuC-GGUCCGuuUGCCAUUC-----GUCGc -5'
5165 3' -54.3 NC_001798.1 + 124327 0.66 0.951981
Target:  5'- cGUGGGCCGGGaCGGcGCGGaAAGCgucauccgcccgaccAGCGc -3'
miRNA:   3'- -CGCUCGGUCC-GUU-UGCCaUUCG---------------UCGC- -5'
5165 3' -54.3 NC_001798.1 + 43743 0.66 0.951981
Target:  5'- aGUGGGCCAGGUAGauGuacguaaugaauuccCGGUcggacacgcgcAGGCAGCu -3'
miRNA:   3'- -CGCUCGGUCCGUU--U---------------GCCA-----------UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 60746 0.66 0.950315
Target:  5'- aGCGAGUCcaaaAGGCucguGCG--AAGCGGCGc -3'
miRNA:   3'- -CGCUCGG----UCCGuu--UGCcaUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 64141 0.66 0.950315
Target:  5'- aGgGGGUCGGuGCucGCGGggGAGaCGGCGg -3'
miRNA:   3'- -CgCUCGGUC-CGuuUGCCa-UUC-GUCGC- -5'
5165 3' -54.3 NC_001798.1 + 9658 0.66 0.950315
Target:  5'- aGCGGGCCGcGC--GCGGaGGGC-GCGg -3'
miRNA:   3'- -CGCUCGGUcCGuuUGCCaUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 75122 0.66 0.945984
Target:  5'- cGC-AGuCCGGGCA---GGgcGGCGGCGa -3'
miRNA:   3'- -CGcUC-GGUCCGUuugCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 70296 0.66 0.945984
Target:  5'- gGCGuuucuguuGUCGGGCGcGGCGGUcGGCccGGCGg -3'
miRNA:   3'- -CGCu-------CGGUCCGU-UUGCCAuUCG--UCGC- -5'
5165 3' -54.3 NC_001798.1 + 51479 0.66 0.945984
Target:  5'- cGCGuGUCGGGCccgGAGCuGcAGGCGGCa -3'
miRNA:   3'- -CGCuCGGUCCG---UUUGcCaUUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 22680 0.66 0.945984
Target:  5'- cCG-GUCggAGGCGAuguCGGcgGAGCAGCGg -3'
miRNA:   3'- cGCuCGG--UCCGUUu--GCCa-UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 153437 0.66 0.945984
Target:  5'- uCGGGCCAGGCGcGCGGccgucucccAGGCcaccagauGGCGc -3'
miRNA:   3'- cGCUCGGUCCGUuUGCCa--------UUCG--------UCGC- -5'
5165 3' -54.3 NC_001798.1 + 29632 0.66 0.945984
Target:  5'- uCGGGCCGcauucgcaccccGGCAcugcgagcGACGG--AGCGGCGg -3'
miRNA:   3'- cGCUCGGU------------CCGU--------UUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2325 0.66 0.945984
Target:  5'- -aGGGCCGGGCGccacggcGCGGggAAG-AGCGg -3'
miRNA:   3'- cgCUCGGUCCGUu------UGCCa-UUCgUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.