miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 5' -63.4 NC_001798.1 + 127008 0.66 0.63993
Target:  5'- aUCGgacGCGGUgUCGCuc-CGGCCGGCCGu -3'
miRNA:   3'- gGGC---CGCCA-AGCGcacGCCGGUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 56761 0.66 0.63993
Target:  5'- gCUGGCaGGUgaaggugCGCGgGgGGCCcuGGCCGc -3'
miRNA:   3'- gGGCCG-CCAa------GCGCaCgCCGG--UCGGC- -5'
5165 5' -63.4 NC_001798.1 + 26021 0.66 0.63993
Target:  5'- gCCGGgGGUcuUCGCGcGCGuGgaGGCCGc -3'
miRNA:   3'- gGGCCgCCA--AGCGCaCGC-CggUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 35433 0.66 0.63993
Target:  5'- -gCGGCGGgagGCGUG-GGCCGcuggcGCCGc -3'
miRNA:   3'- ggGCCGCCaagCGCACgCCGGU-----CGGC- -5'
5165 5' -63.4 NC_001798.1 + 52967 0.66 0.63993
Target:  5'- gUCCGGgaGGcgCGCGaccgggcuggGCGGCCcGCCa -3'
miRNA:   3'- -GGGCCg-CCaaGCGCa---------CGCCGGuCGGc -5'
5165 5' -63.4 NC_001798.1 + 59674 0.66 0.63993
Target:  5'- aCUCGGC---UCGCGUGgGGgCGGCgGg -3'
miRNA:   3'- -GGGCCGccaAGCGCACgCCgGUCGgC- -5'
5165 5' -63.4 NC_001798.1 + 84221 0.66 0.63993
Target:  5'- cCCCGG-GGcgC-CGUGgGGCCGGUUa -3'
miRNA:   3'- -GGGCCgCCaaGcGCACgCCGGUCGGc -5'
5165 5' -63.4 NC_001798.1 + 1878 0.66 0.63993
Target:  5'- -gCGGCGG-UCGCaG-GC-GCCGGCCa -3'
miRNA:   3'- ggGCCGCCaAGCG-CaCGcCGGUCGGc -5'
5165 5' -63.4 NC_001798.1 + 59467 0.66 0.63993
Target:  5'- gCCCGggcGCGGUgagGCGUuCGGCCAccacccguuGCCGu -3'
miRNA:   3'- -GGGC---CGCCAag-CGCAcGCCGGU---------CGGC- -5'
5165 5' -63.4 NC_001798.1 + 111226 0.66 0.63993
Target:  5'- uCCCGGCcgccagCGCGUcGCGGaaCAGCCc -3'
miRNA:   3'- -GGGCCGccaa--GCGCA-CGCCg-GUCGGc -5'
5165 5' -63.4 NC_001798.1 + 23724 0.66 0.63993
Target:  5'- cCCCGGCGGgUCGagcuggacgcCGacGCGGCCu-CCGg -3'
miRNA:   3'- -GGGCCGCCaAGC----------GCa-CGCCGGucGGC- -5'
5165 5' -63.4 NC_001798.1 + 6021 0.66 0.63416
Target:  5'- -gCGGCGGcaUCGCGaagGgGGCCAcagcgagacagagacGCCGg -3'
miRNA:   3'- ggGCCGCCa-AGCGCa--CgCCGGU---------------CGGC- -5'
5165 5' -63.4 NC_001798.1 + 135331 0.66 0.630313
Target:  5'- gCCUGGUGccGgaCGCGUGCGacGCCuGCCc -3'
miRNA:   3'- -GGGCCGC--CaaGCGCACGC--CGGuCGGc -5'
5165 5' -63.4 NC_001798.1 + 147182 0.66 0.630313
Target:  5'- gCCgGGCGGaagGCGUcccccgcccgGCGGuCCGGCCc -3'
miRNA:   3'- -GGgCCGCCaagCGCA----------CGCC-GGUCGGc -5'
5165 5' -63.4 NC_001798.1 + 61841 0.66 0.630313
Target:  5'- cCCCGGgGGaccggggaaCGCGgGCcGCCGGCCc -3'
miRNA:   3'- -GGGCCgCCaa-------GCGCaCGcCGGUCGGc -5'
5165 5' -63.4 NC_001798.1 + 128257 0.66 0.630313
Target:  5'- gCCGGCauGGUggacCGCGggcuCGGCCGGCa- -3'
miRNA:   3'- gGGCCG--CCAa---GCGCac--GCCGGUCGgc -5'
5165 5' -63.4 NC_001798.1 + 104517 0.66 0.628389
Target:  5'- aCgCGGCGGcggCGCGguugacgucgucGCGGUgGGCCa -3'
miRNA:   3'- -GgGCCGCCaa-GCGCa-----------CGCCGgUCGGc -5'
5165 5' -63.4 NC_001798.1 + 133032 0.66 0.627427
Target:  5'- gCCGGCcgaGGUggUCGCGcucaugcGCGGCCucaacagccuggucGGCCGc -3'
miRNA:   3'- gGGCCG---CCA--AGCGCa------CGCCGG--------------UCGGC- -5'
5165 5' -63.4 NC_001798.1 + 23249 0.66 0.624542
Target:  5'- gUCC-GCGGUcCGCGggGCguacccggaccccauGGCCAGCCu -3'
miRNA:   3'- -GGGcCGCCAaGCGCa-CG---------------CCGGUCGGc -5'
5165 5' -63.4 NC_001798.1 + 40007 0.66 0.620696
Target:  5'- aCUCGG-GGUcgUCGCG-GCGGCCcuCCu -3'
miRNA:   3'- -GGGCCgCCA--AGCGCaCGCCGGucGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.