Results 41 - 60 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5169 | 5' | -56.6 | NC_001798.1 | + | 147006 | 0.71 | 0.620914 |
Target: 5'- uGCCUCGGGGAcccccGGGCGggccgGGGCUugGCCg -3' miRNA: 3'- -UGGGGCUCCU-----CUCGUg----CUUGAugCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 135489 | 0.71 | 0.627994 |
Target: 5'- gACCCCGGGGAcGcggacgccgcgcacGGCGCGAuccaggACGCCc -3' miRNA: 3'- -UGGGGCUCCU-C--------------UCGUGCUuga---UGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 71503 | 0.71 | 0.620914 |
Target: 5'- gGCUCgCGcGG-GAGUACGGgcACUACGCCg -3' miRNA: 3'- -UGGG-GCuCCuCUCGUGCU--UGAUGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 89414 | 0.71 | 0.620914 |
Target: 5'- cCCCCGAGGcacGGC-CGGGCgcuuggGCGCCu -3' miRNA: 3'- uGGGGCUCCuc-UCGuGCUUGa-----UGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 32369 | 0.71 | 0.671424 |
Target: 5'- gGCCCCGAGcccGGGGCccGCGAcCcgGCGCCc -3' miRNA: 3'- -UGGGGCUCc--UCUCG--UGCUuGa-UGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 9645 | 0.71 | 0.661352 |
Target: 5'- cGCCCCGAGGc--GCAgCGGGCcGCGCg -3' miRNA: 3'- -UGGGGCUCCucuCGU-GCUUGaUGCGg -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 145780 | 0.71 | 0.671424 |
Target: 5'- cACCCCGGGGuccacacaGGAGCGCGcgggcggcagaAACgcggGCGCg -3' miRNA: 3'- -UGGGGCUCC--------UCUCGUGC-----------UUGa---UGCGg -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 16189 | 0.71 | 0.651256 |
Target: 5'- --aCCGGGGGGAcGCACGGGC--CGCCc -3' miRNA: 3'- uggGGCUCCUCU-CGUGCUUGauGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 3196 | 0.71 | 0.63103 |
Target: 5'- gGCCCCggccggcgcgGAGGcGGGCGCGGcGCUcagGCGCCc -3' miRNA: 3'- -UGGGG----------CUCCuCUCGUGCU-UGA---UGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 65682 | 0.71 | 0.620914 |
Target: 5'- cGCCCCG-GuGGGGCGCGuGCUcuguuuguuguGCGCCg -3' miRNA: 3'- -UGGGGCuCcUCUCGUGCuUGA-----------UGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 93084 | 0.71 | 0.620914 |
Target: 5'- aGCCCC-AGcGGGGCGCGcGCgACGCCg -3' miRNA: 3'- -UGGGGcUCcUCUCGUGCuUGaUGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 21941 | 0.71 | 0.661352 |
Target: 5'- gGCCCCGcccccuuuGGGcGGAGCGCGGGaugACGCg -3' miRNA: 3'- -UGGGGC--------UCC-UCUCGUGCUUga-UGCGg -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 36271 | 0.7 | 0.711314 |
Target: 5'- gACCCCGGGGuGGGCGgCGGGggGgggUGCCg -3' miRNA: 3'- -UGGGGCUCCuCUCGU-GCUUgaU---GCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 122416 | 0.7 | 0.710328 |
Target: 5'- gGCCCUGAcGGAggccugugccgccGAGCGCGucgUGCGCCc -3' miRNA: 3'- -UGGGGCU-CCU-------------CUCGUGCuugAUGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 112768 | 0.7 | 0.711314 |
Target: 5'- aGCCCgCGGGGAGGgcggacGCACGgAugUGCGgCu -3' miRNA: 3'- -UGGG-GCUCCUCU------CGUGC-UugAUGCgG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 79993 | 0.7 | 0.711314 |
Target: 5'- cCCCCGGGGGucccAGCGCc-ACUGCGUCg -3' miRNA: 3'- uGGGGCUCCUc---UCGUGcuUGAUGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 138161 | 0.7 | 0.711314 |
Target: 5'- cCCCCGGGuccuGGGGGCGCGAcCcGCgGCCg -3' miRNA: 3'- uGGGGCUC----CUCUCGUGCUuGaUG-CGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 102098 | 0.7 | 0.721145 |
Target: 5'- -gCCCGuAGGGGGcguggguacgcGCGCGcAugUGCGCCa -3' miRNA: 3'- ugGGGC-UCCUCU-----------CGUGC-UugAUGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 93470 | 0.7 | 0.680462 |
Target: 5'- gACCgCGAGGGccacguggugcccGGGUACGAGggGCGCCc -3' miRNA: 3'- -UGGgGCUCCU-------------CUCGUGCUUgaUGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 48119 | 0.7 | 0.721145 |
Target: 5'- cCCCCGGGuGGccggguucaacaAGCGCGucuuCUGCGCCg -3' miRNA: 3'- uGGGGCUCcUC------------UCGUGCuu--GAUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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