Results 41 - 60 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5169 | 5' | -56.6 | NC_001798.1 | + | 39271 | 0.66 | 0.909045 |
Target: 5'- cAUCCCGccaaAGGGGucuuGCAUGAccagggcACUGCGUCc -3' miRNA: 3'- -UGGGGC----UCCUCu---CGUGCU-------UGAUGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 23868 | 0.66 | 0.909644 |
Target: 5'- cGCCCCGGccucuGGGGGGCGCccgaGGCggaggagGCGCg -3' miRNA: 3'- -UGGGGCU-----CCUCUCGUGc---UUGa------UGCGg -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 27698 | 0.66 | 0.909644 |
Target: 5'- uCCCCGGGGgaaaagaggcGGGGCGgGAGuccccgucCUGcCGCCg -3' miRNA: 3'- uGGGGCUCC----------UCUCGUgCUU--------GAU-GCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 45445 | 0.66 | 0.909644 |
Target: 5'- cCCCCGGGccuacGAGGGCACaAGCcccggagguUGCGUCg -3' miRNA: 3'- uGGGGCUC-----CUCUCGUGcUUG---------AUGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 64208 | 0.66 | 0.909644 |
Target: 5'- gACCCCGAucGGAGCGCuguuGCUuacaGCGCg -3' miRNA: 3'- -UGGGGCUccUCUCGUGcu--UGA----UGCGg -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 133595 | 0.66 | 0.899791 |
Target: 5'- uUCCCGGGGcGGGGCGCGuuaaaaaccucaccaAGCga-GCCa -3' miRNA: 3'- uGGGGCUCC-UCUCGUGC---------------UUGaugCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 90640 | 0.66 | 0.897237 |
Target: 5'- cGCCUCGAagugguccgcGGAGAuGcCGCGGAacgACGCCc -3' miRNA: 3'- -UGGGGCU----------CCUCU-C-GUGCUUga-UGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 134461 | 0.66 | 0.890694 |
Target: 5'- cACCCCGGcgcgcGGuuGGCGUGGGC-GCGCCu -3' miRNA: 3'- -UGGGGCU-----CCucUCGUGCUUGaUGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 136660 | 0.66 | 0.890694 |
Target: 5'- gGCCgaGAGGAcgGGGgGCGGAUugUugGCCa -3' miRNA: 3'- -UGGggCUCCU--CUCgUGCUUG--AugCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 145386 | 0.66 | 0.890694 |
Target: 5'- -aCCCGAGGGGcGaCGCGGggaaaGC-GCGCCc -3' miRNA: 3'- ugGGGCUCCUCuC-GUGCU-----UGaUGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 73712 | 0.66 | 0.895298 |
Target: 5'- gGCCCCGcucguGGcGGGCGCGGcacacaugauuccgGCcGCGCUa -3' miRNA: 3'- -UGGGGCu----CCuCUCGUGCU--------------UGaUGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 146681 | 0.66 | 0.896593 |
Target: 5'- cACUCCcacguugGGGGGGGGCGCGcAGCUGagUGCUc -3' miRNA: 3'- -UGGGG-------CUCCUCUCGUGC-UUGAU--GCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 142322 | 0.66 | 0.897237 |
Target: 5'- uACCCaGAGGcuGGAGCGCuGGugggACGCCc -3' miRNA: 3'- -UGGGgCUCC--UCUCGUG-CUuga-UGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 39429 | 0.66 | 0.897237 |
Target: 5'- gGCCguCCGcgugcGGGGGGGuCAgGGACaGCGCCa -3' miRNA: 3'- -UGG--GGC-----UCCUCUC-GUgCUUGaUGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 92247 | 0.66 | 0.897237 |
Target: 5'- cCUCCGGGGccgauGGGGUACGuguauGGCcGCGCCu -3' miRNA: 3'- uGGGGCUCC-----UCUCGUGC-----UUGaUGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 95359 | 0.66 | 0.897237 |
Target: 5'- aGCUCCGGGGcaucauugcGGAGgGCGGggcgGCgguCGCCa -3' miRNA: 3'- -UGGGGCUCC---------UCUCgUGCU----UGau-GCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 22396 | 0.66 | 0.897237 |
Target: 5'- aACCCCGGcGAGccggGGCGCG-GCgGCGUCg -3' miRNA: 3'- -UGGGGCUcCUC----UCGUGCuUGaUGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 50088 | 0.66 | 0.897237 |
Target: 5'- cGCuCCUGcGGAG-GC-CGGGCUggugGCGCCg -3' miRNA: 3'- -UG-GGGCuCCUCuCGuGCUUGA----UGCGG- -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 71112 | 0.66 | 0.897237 |
Target: 5'- cCCCCGGGGAcgcugauggcgcGcGUGCGGACggACGCg -3' miRNA: 3'- uGGGGCUCCU------------CuCGUGCUUGa-UGCGg -5' |
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5169 | 5' | -56.6 | NC_001798.1 | + | 121077 | 0.66 | 0.897237 |
Target: 5'- gGCCCCGAGGA---CGCGcAC-ACGCa -3' miRNA: 3'- -UGGGGCUCCUcucGUGCuUGaUGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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