miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 3' -55.6 NC_001798.1 + 91798 0.66 0.925148
Target:  5'- gAUGACGCGCGGgG-CGUggGGACCGu -3'
miRNA:   3'- aUGUUGUGCGUCgUgGCAgaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 1279 0.66 0.919591
Target:  5'- cGCAGCAC-CAGCgggggcgcgucGCCGUC-GGGCuCGa -3'
miRNA:   3'- aUGUUGUGcGUCG-----------UGGCAGaCCUG-GC- -5'
5173 3' -55.6 NC_001798.1 + 2408 0.66 0.907753
Target:  5'- gGCGGC-CGagGGCGCCGgcguguggCUGGGCCc -3'
miRNA:   3'- aUGUUGuGCg-UCGUGGCa-------GACCUGGc -5'
5173 3' -55.6 NC_001798.1 + 120923 0.66 0.907753
Target:  5'- uUGCAGUugGCcugauugagaaAGCccauaAUCGUCUGGACCGc -3'
miRNA:   3'- -AUGUUGugCG-----------UCG-----UGGCAGACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 125522 0.66 0.907753
Target:  5'- aGgGACGCGCAGCGCaucgccgccgagCGUCaGGcccGCCGa -3'
miRNA:   3'- aUgUUGUGCGUCGUG------------GCAGaCC---UGGC- -5'
5173 3' -55.6 NC_001798.1 + 28797 0.66 0.907753
Target:  5'- gGCGGCGCGCGGguccucCGCCGcCgcgGGcCCGg -3'
miRNA:   3'- aUGUUGUGCGUC------GUGGCaGa--CCuGGC- -5'
5173 3' -55.6 NC_001798.1 + 52521 0.66 0.907753
Target:  5'- gGCGGC-CGCGcGCGCCGUgCUGGcgaCGg -3'
miRNA:   3'- aUGUUGuGCGU-CGUGGCA-GACCug-GC- -5'
5173 3' -55.6 NC_001798.1 + 2281 0.66 0.907136
Target:  5'- cGCAGCGCGCGGCcagcgagGCCagcgcgcgcggGUCgaacaugaGGGCCGg -3'
miRNA:   3'- aUGUUGUGCGUCG-------UGG-----------CAGa-------CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 85347 0.66 0.906516
Target:  5'- cUugGACAcggggcccuucgcCGCGGCGuCCGUCgacaccuucgcgcUGGACCGc -3'
miRNA:   3'- -AugUUGU-------------GCGUCGU-GGCAG-------------ACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 34579 0.66 0.901475
Target:  5'- gACGGCucACGCGGCGCggCGUCUcggugGGACgCGg -3'
miRNA:   3'- aUGUUG--UGCGUCGUG--GCAGA-----CCUG-GC- -5'
5173 3' -55.6 NC_001798.1 + 75282 0.66 0.901475
Target:  5'- cGCGGCGCGCGaUGCCGccCUGGcCCGc -3'
miRNA:   3'- aUGUUGUGCGUcGUGGCa-GACCuGGC- -5'
5173 3' -55.6 NC_001798.1 + 96935 0.66 0.901475
Target:  5'- cGCccGCGCGCgAGCGCUcuguGUgCUGGACCa -3'
miRNA:   3'- aUGu-UGUGCG-UCGUGG----CA-GACCUGGc -5'
5173 3' -55.6 NC_001798.1 + 8824 0.66 0.894961
Target:  5'- -cCGACGCGCuggaacGCACCGagUCUuggucggcGGGCCGg -3'
miRNA:   3'- auGUUGUGCGu-----CGUGGC--AGA--------CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 137226 0.66 0.894961
Target:  5'- gGCcAUGCGCAGCAgCGcCUGGuuGCUGa -3'
miRNA:   3'- aUGuUGUGCGUCGUgGCaGACC--UGGC- -5'
5173 3' -55.6 NC_001798.1 + 106458 0.66 0.894961
Target:  5'- --gAACACGCAGaUGCaGUCUGGGCgGc -3'
miRNA:   3'- augUUGUGCGUC-GUGgCAGACCUGgC- -5'
5173 3' -55.6 NC_001798.1 + 18200 0.67 0.888214
Target:  5'- gACAcagGCGCGCAGCcucGCCGgg-GGACgGu -3'
miRNA:   3'- aUGU---UGUGCGUCG---UGGCagaCCUGgC- -5'
5173 3' -55.6 NC_001798.1 + 1597 0.67 0.888214
Target:  5'- cGCGugcGCACGCGGUACCGcacgUUGGcCCc -3'
miRNA:   3'- aUGU---UGUGCGUCGUGGCa---GACCuGGc -5'
5173 3' -55.6 NC_001798.1 + 10649 0.67 0.888214
Target:  5'- cACGAC-CGUcucgAGCAcCCGUCggggGGGCCa -3'
miRNA:   3'- aUGUUGuGCG----UCGU-GGCAGa---CCUGGc -5'
5173 3' -55.6 NC_001798.1 + 23639 0.67 0.888214
Target:  5'- gGCGAC-CGCGG-GCCGcCUGGAgCGc -3'
miRNA:   3'- aUGUUGuGCGUCgUGGCaGACCUgGC- -5'
5173 3' -55.6 NC_001798.1 + 9141 0.67 0.888214
Target:  5'- cUGCGGCACGCgggcgcGGCGCCGcCcGcGCCGg -3'
miRNA:   3'- -AUGUUGUGCG------UCGUGGCaGaCcUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.