miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 5' -64.7 NC_001798.1 + 6371 0.66 0.504614
Target:  5'- --gGGCCGGGGGGcCGGgGGgccgGGg-- -3'
miRNA:   3'- uagCCGGCCCCUCcGCCgCCa---CCauu -5'
5173 5' -64.7 NC_001798.1 + 88032 0.66 0.499068
Target:  5'- cUUGGCCGGGGAgggcagggccgcuggGGgGGCGGgcucguccccUGGg-- -3'
miRNA:   3'- uAGCCGGCCCCU---------------CCgCCGCC----------ACCauu -5'
5173 5' -64.7 NC_001798.1 + 73649 0.66 0.495386
Target:  5'- -aUGGgCGGGGGGGUucgGGCGGcGGa-- -3'
miRNA:   3'- uaGCCgGCCCCUCCG---CCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 27308 0.66 0.495386
Target:  5'- cUCGGCgggauggaGGGGAGGgaGGgGGUGGc-- -3'
miRNA:   3'- uAGCCGg-------CCCCUCCg-CCgCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 26817 0.66 0.486237
Target:  5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3'
miRNA:   3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 26847 0.66 0.486237
Target:  5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3'
miRNA:   3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 26877 0.66 0.486237
Target:  5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3'
miRNA:   3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 26966 0.66 0.486237
Target:  5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3'
miRNA:   3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 26996 0.66 0.486237
Target:  5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3'
miRNA:   3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 6403 0.66 0.486237
Target:  5'- --gGGCCGGGGGGaCGGgGGgacgGGg-- -3'
miRNA:   3'- uagCCGGCCCCUCcGCCgCCa---CCauu -5'
5173 5' -64.7 NC_001798.1 + 34629 0.66 0.486237
Target:  5'- -gCGGCgGGGGGGGgGGgGGgaaauGUGAg -3'
miRNA:   3'- uaGCCGgCCCCUCCgCCgCCac---CAUU- -5'
5173 5' -64.7 NC_001798.1 + 56413 0.66 0.486237
Target:  5'- -gCGGCgGGGGcuGGUGGCugccGUGGUGc -3'
miRNA:   3'- uaGCCGgCCCCu-CCGCCGc---CACCAUu -5'
5173 5' -64.7 NC_001798.1 + 90424 0.66 0.486237
Target:  5'- -gCGGCCGGGcuuGAGGCGGUaccagccgaaGGUGa--- -3'
miRNA:   3'- uaGCCGGCCC---CUCCGCCG----------CCACcauu -5'
5173 5' -64.7 NC_001798.1 + 16218 0.66 0.486237
Target:  5'- -aCGcGCCgccuguGGGGGGGCGGUGGggccgGGg-- -3'
miRNA:   3'- uaGC-CGG------CCCCUCCGCCGCCa----CCauu -5'
5173 5' -64.7 NC_001798.1 + 45914 0.66 0.486237
Target:  5'- aAUCGGCgGGucucgGGGGGUGGCGGUc---- -3'
miRNA:   3'- -UAGCCGgCC-----CCUCCGCCGCCAccauu -5'
5173 5' -64.7 NC_001798.1 + 70320 0.66 0.477168
Target:  5'- gGUCGGcCCGGcGGAGGC-GCGG-GcGUGc -3'
miRNA:   3'- -UAGCC-GGCC-CCUCCGcCGCCaC-CAUu -5'
5173 5' -64.7 NC_001798.1 + 128238 0.66 0.477168
Target:  5'- cGUCGuGUCGcuGGAGGCGGCcGGcaUGGUGGa -3'
miRNA:   3'- -UAGC-CGGCc-CCUCCGCCG-CC--ACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 24570 0.66 0.468183
Target:  5'- -gCGGCCGGcgcgcGGAGGCGGgcCGcGUGGc-- -3'
miRNA:   3'- uaGCCGGCC-----CCUCCGCC--GC-CACCauu -5'
5173 5' -64.7 NC_001798.1 + 29903 0.66 0.468183
Target:  5'- --gGGuuGGGGGuGGUcgcgGGCGGUGGg-- -3'
miRNA:   3'- uagCCggCCCCU-CCG----CCGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 146033 0.66 0.459287
Target:  5'- --aGGCgCGguGGGGGGC-GUGGUGGUGAa -3'
miRNA:   3'- uagCCG-GC--CCCUCCGcCGCCACCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.