miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5175 3' -62.3 NC_001798.1 + 138173 0.66 0.667923
Target:  5'- -gGGGGcGCGACccGCGGcCGGugcCGCCCu -3'
miRNA:   3'- ugCCCC-CGCUGu-CGCCaGCU---GUGGGu -5'
5175 3' -62.3 NC_001798.1 + 47870 0.66 0.667923
Target:  5'- cCGuGGGCGcCGGCGGgcgcUCGcACGCCCc -3'
miRNA:   3'- uGCcCCCGCuGUCGCC----AGC-UGUGGGu -5'
5175 3' -62.3 NC_001798.1 + 12039 0.66 0.667923
Target:  5'- gGCGGGGGCau--GCGGUCaguGugACCa- -3'
miRNA:   3'- -UGCCCCCGcuguCGCCAG---CugUGGgu -5'
5175 3' -62.3 NC_001798.1 + 11458 0.66 0.667923
Target:  5'- cGCGGGGGCGccuguauCGGCGc-UGGCAUCUAu -3'
miRNA:   3'- -UGCCCCCGCu------GUCGCcaGCUGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 30053 0.66 0.667923
Target:  5'- aGCGGGGGacagggggggaGACgAGgGGUCGGaAUCCAa -3'
miRNA:   3'- -UGCCCCCg----------CUG-UCgCCAGCUgUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 151840 0.66 0.658198
Target:  5'- gGCGcGGGGCGugAgGCGG--GACcCCCGc -3'
miRNA:   3'- -UGC-CCCCGCugU-CGCCagCUGuGGGU- -5'
5175 3' -62.3 NC_001798.1 + 32359 0.66 0.658198
Target:  5'- cGCGGaGGGCGGCcccgAGCccGGggcccgcgaccCGGCGCCCGg -3'
miRNA:   3'- -UGCC-CCCGCUG----UCG--CCa----------GCUGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 109698 0.66 0.658198
Target:  5'- gGCGGGcGCGcccucggccgaGCAGCGGgaaCG-CGCCCGc -3'
miRNA:   3'- -UGCCCcCGC-----------UGUCGCCa--GCuGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 31225 0.66 0.658198
Target:  5'- cGCGGagcaGCaGCAGCGG-CGGCGCCCc -3'
miRNA:   3'- -UGCCcc--CGcUGUCGCCaGCUGUGGGu -5'
5175 3' -62.3 NC_001798.1 + 110621 0.66 0.648453
Target:  5'- aACGGGuGuGUGgacGCAGCGG-CGuccACGCCCAa -3'
miRNA:   3'- -UGCCC-C-CGC---UGUCGCCaGC---UGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 1395 0.66 0.648453
Target:  5'- cACGuagacGGGCcGCAGCGG-CG-CGCCCAg -3'
miRNA:   3'- -UGCc----CCCGcUGUCGCCaGCuGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 34834 0.66 0.648453
Target:  5'- cCGGGGGCccgGGCcggaccgccgGGCGGggGACGCCUu -3'
miRNA:   3'- uGCCCCCG---CUG----------UCGCCagCUGUGGGu -5'
5175 3' -62.3 NC_001798.1 + 98494 0.66 0.648453
Target:  5'- aGCGGGcGGCGGgAGCGa-CG-CGCCCc -3'
miRNA:   3'- -UGCCC-CCGCUgUCGCcaGCuGUGGGu -5'
5175 3' -62.3 NC_001798.1 + 125719 0.66 0.648453
Target:  5'- cGCGGGGGCGGCgagaugAGCcga-GACGCCg- -3'
miRNA:   3'- -UGCCCCCGCUG------UCGccagCUGUGGgu -5'
5175 3' -62.3 NC_001798.1 + 153030 0.66 0.646502
Target:  5'- cCGGGcccgcgcGGCGGCGcGCGGUUGGCcggcgccGCCCc -3'
miRNA:   3'- uGCCC-------CCGCUGU-CGCCAGCUG-------UGGGu -5'
5175 3' -62.3 NC_001798.1 + 27230 0.66 0.638697
Target:  5'- cGCGGGGgagGCGGCcGCGGgggaGGCGgCCGc -3'
miRNA:   3'- -UGCCCC---CGCUGuCGCCag--CUGUgGGU- -5'
5175 3' -62.3 NC_001798.1 + 71408 0.66 0.638697
Target:  5'- gGCGGGGGUGcCcGCGcg-GACGCCCc -3'
miRNA:   3'- -UGCCCCCGCuGuCGCcagCUGUGGGu -5'
5175 3' -62.3 NC_001798.1 + 146593 0.66 0.638697
Target:  5'- gACGGGccgcGGCGcCAGCGGcCcACGCCUc -3'
miRNA:   3'- -UGCCC----CCGCuGUCGCCaGcUGUGGGu -5'
5175 3' -62.3 NC_001798.1 + 10291 0.66 0.638697
Target:  5'- -gGGGGGCGACGGgGGgaCGACGg--- -3'
miRNA:   3'- ugCCCCCGCUGUCgCCa-GCUGUgggu -5'
5175 3' -62.3 NC_001798.1 + 4086 0.66 0.638697
Target:  5'- cGCGGGGGUccgGGCcggGGCGGgcUCGGC-CCUg -3'
miRNA:   3'- -UGCCCCCG---CUG---UCGCC--AGCUGuGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.