miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 3' -55 NC_001798.1 + 43024 0.65 0.929075
Target:  5'- cGGGGGGaGC-GCGG-GgCCCCGGGCg -3'
miRNA:   3'- uUCCCUUaUGuCGCUaCgGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 76986 0.65 0.929075
Target:  5'- uGGGGcAGUACcGgGAgGCCCUgGAACa -3'
miRNA:   3'- uUCCC-UUAUGuCgCUaCGGGGgCUUG- -5'
5181 3' -55 NC_001798.1 + 36038 0.65 0.929075
Target:  5'- uGGGGggUgGCGGCGGuggucggcgUGCUgCCGGAg -3'
miRNA:   3'- uUCCCuuA-UGUCGCU---------ACGGgGGCUUg -5'
5181 3' -55 NC_001798.1 + 138139 0.66 0.923616
Target:  5'- -uGGcGAAgcUGCuGCGGUcgcGCCCCCGggUc -3'
miRNA:   3'- uuCC-CUU--AUGuCGCUA---CGGGGGCuuG- -5'
5181 3' -55 NC_001798.1 + 102388 0.66 0.917908
Target:  5'- uGGcGGucgGCGGCGAUgGCCCCCa--- -3'
miRNA:   3'- uUC-CCuuaUGUCGCUA-CGGGGGcuug -5'
5181 3' -55 NC_001798.1 + 87387 0.66 0.917908
Target:  5'- gGAGGGGggGCGuGCGA--CCCCCGGu- -3'
miRNA:   3'- -UUCCCUuaUGU-CGCUacGGGGGCUug -5'
5181 3' -55 NC_001798.1 + 132149 0.66 0.917908
Target:  5'- cGGGGGccgGCgGGCGGggcgcccCCCCCGGACg -3'
miRNA:   3'- uUCCCUua-UG-UCGCUac-----GGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 85669 0.66 0.917908
Target:  5'- --cGGAccgACGGCGggGUgCCCGGGCg -3'
miRNA:   3'- uucCCUua-UGUCGCuaCGgGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 39470 0.66 0.916147
Target:  5'- gGAGGGGGggccugGCGcgugccucguggccGCGG-GCCCCCGGAg -3'
miRNA:   3'- -UUCCCUUa-----UGU--------------CGCUaCGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 97532 0.66 0.914364
Target:  5'- gGAGGGGGggcggaggcguggcGCGGgGAcGCCCgCGAGCg -3'
miRNA:   3'- -UUCCCUUa-------------UGUCgCUaCGGGgGCUUG- -5'
5181 3' -55 NC_001798.1 + 111346 0.66 0.905748
Target:  5'- cGGGGAAgggggACAuGCGccGCUCCCGGu- -3'
miRNA:   3'- uUCCCUUa----UGU-CGCuaCGGGGGCUug -5'
5181 3' -55 NC_001798.1 + 31976 0.66 0.905114
Target:  5'- cAGGGggUgggggccaagaggGCGGCGccGCgccgggCCCCGGACu -3'
miRNA:   3'- uUCCCuuA-------------UGUCGCuaCG------GGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 84846 0.66 0.899299
Target:  5'- -cGGGAAUAuaaccucuaguuCGGCGGgggucaUGUCCUCGAACc -3'
miRNA:   3'- uuCCCUUAU------------GUCGCU------ACGGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 150956 0.66 0.899299
Target:  5'- aGAGGGAG-ACAGagacgGGaGCCCCCGGu- -3'
miRNA:   3'- -UUCCCUUaUGUCg----CUaCGGGGGCUug -5'
5181 3' -55 NC_001798.1 + 47227 0.66 0.899299
Target:  5'- gAAGGGGugggcgugucGUugGGCG--GCCCCCGGc- -3'
miRNA:   3'- -UUCCCU----------UAugUCGCuaCGGGGGCUug -5'
5181 3' -55 NC_001798.1 + 110382 0.67 0.88568
Target:  5'- cAGGGGc--CGGUGGcggGCaCCCCGAACg -3'
miRNA:   3'- uUCCCUuauGUCGCUa--CG-GGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 28860 0.67 0.882843
Target:  5'- cGAGGGcggccucggcCGGCGGaGCCCCgGAGCu -3'
miRNA:   3'- -UUCCCuuau------GUCGCUaCGGGGgCUUG- -5'
5181 3' -55 NC_001798.1 + 107430 0.67 0.878518
Target:  5'- -cGGGggUcgccGCGGCGAccccGCgCCCCGAc- -3'
miRNA:   3'- uuCCCuuA----UGUCGCUa---CG-GGGGCUug -5'
5181 3' -55 NC_001798.1 + 154116 0.67 0.878518
Target:  5'- cGGGGAccccgGCGGCGggGaCCCCGGcgGCg -3'
miRNA:   3'- uUCCCUua---UGUCGCuaCgGGGGCU--UG- -5'
5181 3' -55 NC_001798.1 + 113762 0.67 0.878518
Target:  5'- cGGGGGggUauuaaggcagggGCAGCuc-GCCCCCGuGCc -3'
miRNA:   3'- -UUCCCuuA------------UGUCGcuaCGGGGGCuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.