miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 5' -59.9 NC_001798.1 + 139406 0.66 0.796784
Target:  5'- uCCGCCCccacagcagccCGGGGCcagacCCGCCGUgcgGUUc- -3'
miRNA:   3'- -GGUGGGu----------GCCCCG-----GGCGGCAa--CAAcg -5'
5181 5' -59.9 NC_001798.1 + 87537 0.66 0.796784
Target:  5'- gCCGCCCACGuGuGGCagaGCaCGUUugUGCu -3'
miRNA:   3'- -GGUGGGUGC-C-CCGgg-CG-GCAAcaACG- -5'
5181 5' -59.9 NC_001798.1 + 28813 0.66 0.796784
Target:  5'- uCCGCCgC-CGcGGGCCCggGCCGUcgg-GCg -3'
miRNA:   3'- -GGUGG-GuGC-CCCGGG--CGGCAacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 123457 0.66 0.796784
Target:  5'- gCGCCCccgaccCGGGGCCCgaaGCCGaccucGUcGCg -3'
miRNA:   3'- gGUGGGu-----GCCCCGGG---CGGCaa---CAaCG- -5'
5181 5' -59.9 NC_001798.1 + 15831 0.66 0.796784
Target:  5'- gCCGCCCgguucGgGGGGCCCGaaCGUcGggGUc -3'
miRNA:   3'- -GGUGGG-----UgCCCCGGGCg-GCAaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 135207 0.66 0.795917
Target:  5'- gCCGCCCuCGcGGGCCUcggggagGCCGggc-UGCc -3'
miRNA:   3'- -GGUGGGuGC-CCCGGG-------CGGCaacaACG- -5'
5181 5' -59.9 NC_001798.1 + 8944 0.66 0.788054
Target:  5'- gCugCgGCGGGGUggCCGCCGgaccuuuaUGCg -3'
miRNA:   3'- gGugGgUGCCCCG--GGCGGCaaca----ACG- -5'
5181 5' -59.9 NC_001798.1 + 2992 0.66 0.788054
Target:  5'- cCgGCCCGCGGGcCCCggGCgCGggGgcGCg -3'
miRNA:   3'- -GgUGGGUGCCCcGGG--CG-GCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 9102 0.66 0.788054
Target:  5'- gCCACgggaaaggCCGCGGGGgagCCGCCGcgaggUGgucUGCg -3'
miRNA:   3'- -GGUG--------GGUGCCCCg--GGCGGCa----ACa--ACG- -5'
5181 5' -59.9 NC_001798.1 + 44975 0.66 0.788054
Target:  5'- uCCGCCCuCGGaGGCggaGCCGcgGcUGCa -3'
miRNA:   3'- -GGUGGGuGCC-CCGgg-CGGCaaCaACG- -5'
5181 5' -59.9 NC_001798.1 + 71109 0.66 0.788054
Target:  5'- gCGCCCcCGGGGa-CGCUGaUGgcGCg -3'
miRNA:   3'- gGUGGGuGCCCCggGCGGCaACaaCG- -5'
5181 5' -59.9 NC_001798.1 + 107635 0.66 0.788054
Target:  5'- gUCGCCCGuCGGGuGUCgagaCGCCc-UGUUGCg -3'
miRNA:   3'- -GGUGGGU-GCCC-CGG----GCGGcaACAACG- -5'
5181 5' -59.9 NC_001798.1 + 123896 0.66 0.788054
Target:  5'- gUACCCACGGacacGGCCCccgaauCCGggGcgUGCu -3'
miRNA:   3'- gGUGGGUGCC----CCGGGc-----GGCaaCa-ACG- -5'
5181 5' -59.9 NC_001798.1 + 132139 0.66 0.788054
Target:  5'- cCUGCgCCGCcgGGGGCCgGCgGgcGggGCg -3'
miRNA:   3'- -GGUG-GGUG--CCCCGGgCGgCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 108682 0.66 0.782753
Target:  5'- gCCGCCCcCGGGgccGCCCGCgGggacaccgagGCa -3'
miRNA:   3'- -GGUGGGuGCCC---CGGGCGgCaacaa-----CG- -5'
5181 5' -59.9 NC_001798.1 + 31861 0.66 0.780086
Target:  5'- cCCACgCCGCGGagggggcggcGGCCCGCCcccggaagagGCg -3'
miRNA:   3'- -GGUG-GGUGCC----------CCGGGCGGcaacaa----CG- -5'
5181 5' -59.9 NC_001798.1 + 62256 0.66 0.779194
Target:  5'- aCCGCCC-CGaGccgaucccaGGCCCGCCGg----GCg -3'
miRNA:   3'- -GGUGGGuGC-C---------CCGGGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 53060 0.66 0.779194
Target:  5'- uCCgACCgGCGGGGCCC-CCGa------ -3'
miRNA:   3'- -GG-UGGgUGCCCCGGGcGGCaacaacg -5'
5181 5' -59.9 NC_001798.1 + 43018 0.66 0.779194
Target:  5'- gCCGCCCggggggagcGCGGGGCCC-CgGgcGcaaaUGCg -3'
miRNA:   3'- -GGUGGG---------UGCCCCGGGcGgCaaCa---ACG- -5'
5181 5' -59.9 NC_001798.1 + 40819 0.66 0.779194
Target:  5'- gCC-CCCugGGGGC-CGCUGguuccGCg -3'
miRNA:   3'- -GGuGGGugCCCCGgGCGGCaacaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.