miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 5' -59.9 NC_001798.1 + 2089 0.7 0.529246
Target:  5'- aCCACUCcggGgGGGGCCCGCCcccGgcGCg -3'
miRNA:   3'- -GGUGGG---UgCCCCGGGCGGcaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 2459 0.7 0.566678
Target:  5'- gCCGCCCugcggguCGGGGCCCucggcggGCCGgcggGUcaGCg -3'
miRNA:   3'- -GGUGGGu------GCCCCGGG-------CGGCaa--CAa-CG- -5'
5181 5' -59.9 NC_001798.1 + 134967 0.7 0.567647
Target:  5'- gCCACCCAUgccgcgugccugGGGGCCUGgcCCGcgGUggGCg -3'
miRNA:   3'- -GGUGGGUG------------CCCCGGGC--GGCaaCAa-CG- -5'
5181 5' -59.9 NC_001798.1 + 129340 0.7 0.567647
Target:  5'- aCGgCCGCGGaGcGCCCGCCGggccugGCg -3'
miRNA:   3'- gGUgGGUGCC-C-CGGGCGGCaacaa-CG- -5'
5181 5' -59.9 NC_001798.1 + 93263 0.7 0.548341
Target:  5'- aCGCCCGCGGcccgcGCCggCGCCGUcGggGCg -3'
miRNA:   3'- gGUGGGUGCCc----CGG--GCGGCAaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 85965 0.7 0.529246
Target:  5'- gCCGCCCgcaACGGGGaguucgaggCCGCCGccGggGCg -3'
miRNA:   3'- -GGUGGG---UGCCCCg--------GGCGGCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 70569 0.7 0.51979
Target:  5'- gCGCaCCACGGcGGCCCugggGCCGg---UGCg -3'
miRNA:   3'- gGUG-GGUGCC-CCGGG----CGGCaacaACG- -5'
5181 5' -59.9 NC_001798.1 + 109245 0.7 0.529246
Target:  5'- gCGCCuCGCGGGGCUgcucgccuCGUCGggGuUUGCg -3'
miRNA:   3'- gGUGG-GUGCCCCGG--------GCGGCaaC-AACG- -5'
5181 5' -59.9 NC_001798.1 + 113437 0.7 0.557971
Target:  5'- aCAUCaaACGGGaucGCCUGCCGUUGUcGCc -3'
miRNA:   3'- gGUGGg-UGCCC---CGGGCGGCAACAaCG- -5'
5181 5' -59.9 NC_001798.1 + 58112 0.7 0.567647
Target:  5'- gCCGCCCA--GGGCCCGgCGUcuggguccuUGUgaagGCg -3'
miRNA:   3'- -GGUGGGUgcCCCGGGCgGCA---------ACAa---CG- -5'
5181 5' -59.9 NC_001798.1 + 85246 0.7 0.538765
Target:  5'- cCCGCCCccccgcggccgcGCGGGGCCgCGCgcgaggcuuCGggGggGCg -3'
miRNA:   3'- -GGUGGG------------UGCCCCGG-GCG---------GCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 4138 0.69 0.61654
Target:  5'- gCCGCCCcCGGGGCCCuCgCGg----GCa -3'
miRNA:   3'- -GGUGGGuGCCCCGGGcG-GCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 56391 0.69 0.626378
Target:  5'- aCCugCCGCucgguGGGGuCCCGCgGcgGggGCu -3'
miRNA:   3'- -GGugGGUG-----CCCC-GGGCGgCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 21791 0.69 0.596905
Target:  5'- cCCGCCCcccguCcGGGCCCGCCuc-GggGCg -3'
miRNA:   3'- -GGUGGGu----GcCCCGGGCGGcaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 152241 0.69 0.606714
Target:  5'- gCCGCUCGgggcCGGGGUCCGCCcg-GgaGCu -3'
miRNA:   3'- -GGUGGGU----GCCCCGGGCGGcaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 47853 0.69 0.605732
Target:  5'- uCCACCCcccgGGGGCCCcgugggcGCCGgcgGgcGCu -3'
miRNA:   3'- -GGUGGGug--CCCCGGG-------CGGCaa-CaaCG- -5'
5181 5' -59.9 NC_001798.1 + 1504 0.69 0.606714
Target:  5'- gCGCCCgagGCGGcGGCCCGgCCGUcca-GCg -3'
miRNA:   3'- gGUGGG---UGCC-CCGGGC-GGCAacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 147241 0.69 0.606714
Target:  5'- -gGCCC-CGGGGCCCcggGCCGcgccgGCg -3'
miRNA:   3'- ggUGGGuGCCCCGGG---CGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 92916 0.69 0.596905
Target:  5'- cCCGCCUgcuguucgagGCGgucgucGGGCCCGCCGccgUGgcccUGCg -3'
miRNA:   3'- -GGUGGG----------UGC------CCCGGGCGGCa--ACa---ACG- -5'
5181 5' -59.9 NC_001798.1 + 68762 0.69 0.61654
Target:  5'- aCgGCCgaACGGGGCCUGCCcggGUgGCc -3'
miRNA:   3'- -GgUGGg-UGCCCCGGGCGGcaaCAaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.