miRNA display CGI


Results 61 - 80 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 135233 0.73 0.213514
Target:  5'- cGGGCuGCCggaaGCCCGggGGCGgGC-GGGCc -3'
miRNA:   3'- -UCCG-CGG----CGGGCuaCCGCgUGuCCCG- -5'
5183 3' -64.2 NC_001798.1 + 123436 0.73 0.218553
Target:  5'- gGGGCGCCcccCCCGAcGcGCGCGCccccgacccGGGGCc -3'
miRNA:   3'- -UCCGCGGc--GGGCUaC-CGCGUG---------UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 125691 0.73 0.218553
Target:  5'- gGGGCGaaggaGUCCGAcgucgGGCGCGCgcgGGGGCg -3'
miRNA:   3'- -UCCGCgg---CGGGCUa----CCGCGUG---UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 37194 0.73 0.218553
Target:  5'- cAGGCGCCGCgCCGAacgacgGGCGCggcGCcGGaGCu -3'
miRNA:   3'- -UCCGCGGCG-GGCUa-----CCGCG---UGuCC-CG- -5'
5183 3' -64.2 NC_001798.1 + 90695 0.73 0.223174
Target:  5'- aGGGcCGCCGCCa---GGCGCucgcagagaucgcGCGGGGCa -3'
miRNA:   3'- -UCC-GCGGCGGgcuaCCGCG-------------UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 111808 0.73 0.223693
Target:  5'- cGuGCGCCGgUCGcgGGCGUccaggggcuggcGCGGGGCg -3'
miRNA:   3'- uC-CGCGGCgGGCuaCCGCG------------UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 98568 0.73 0.223693
Target:  5'- gGGGCGCUggugGCCgCGGUGGCGU-CGGcGGCc -3'
miRNA:   3'- -UCCGCGG----CGG-GCUACCGCGuGUC-CCG- -5'
5183 3' -64.2 NC_001798.1 + 149161 0.73 0.223693
Target:  5'- gAGGCGCCucGgCCGGUGGUccgGUGgGGGGCg -3'
miRNA:   3'- -UCCGCGG--CgGGCUACCG---CGUgUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 2513 0.72 0.228936
Target:  5'- cGGCgGCCGCggCGgcGGCGUcgGCGGGGCg -3'
miRNA:   3'- uCCG-CGGCGg-GCuaCCGCG--UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 134917 0.72 0.228936
Target:  5'- cGGcCGCCGCcgccgCCGAgucGGCGCgugaccugguGCGGGGCg -3'
miRNA:   3'- uCC-GCGGCG-----GGCUa--CCGCG----------UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 36114 0.72 0.233204
Target:  5'- gGGGCccggcugcgucucGCCGCgaucccgCCGGUGGgGCGCGGcGGCg -3'
miRNA:   3'- -UCCG-------------CGGCG-------GGCUACCgCGUGUC-CCG- -5'
5183 3' -64.2 NC_001798.1 + 21816 0.72 0.233742
Target:  5'- gGGGCGgaGCCCGcgGGaugacgcgggcccCGgGCAGGGCg -3'
miRNA:   3'- -UCCGCggCGGGCuaCC-------------GCgUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 102804 0.72 0.234282
Target:  5'- gGGGCGCCGguuuuauaCCCGcgcuccGGCGCA-GGGGCa -3'
miRNA:   3'- -UCCGCGGC--------GGGCua----CCGCGUgUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 58560 0.72 0.234282
Target:  5'- cGGCGUCcUCCGG-GGCGUAuCGGGGCg -3'
miRNA:   3'- uCCGCGGcGGGCUaCCGCGU-GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 122094 0.72 0.239183
Target:  5'- cGGGCcuggaGCCGCCCGGcggGGgGCGCuuugccagccgggGGGGCc -3'
miRNA:   3'- -UCCG-----CGGCGGGCUa--CCgCGUG-------------UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 13035 0.72 0.239732
Target:  5'- gAGGCacGCUGCCgGggGGaUGCGCAGGGg -3'
miRNA:   3'- -UCCG--CGGCGGgCuaCC-GCGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 102362 0.72 0.239732
Target:  5'- cGGCgGCCGCCgGAagcccacccgccUGGCGguCGGcGGCg -3'
miRNA:   3'- uCCG-CGGCGGgCU------------ACCGCguGUC-CCG- -5'
5183 3' -64.2 NC_001798.1 + 97579 0.72 0.239732
Target:  5'- gGGaGCGCgGcCCCGAgccaGGgGCGCAGGGg -3'
miRNA:   3'- -UC-CGCGgC-GGGCUa---CCgCGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 105408 0.72 0.239732
Target:  5'- cAGG-GCCGCCgCGGccgcGGUGCGCuGGGCc -3'
miRNA:   3'- -UCCgCGGCGG-GCUa---CCGCGUGuCCCG- -5'
5183 3' -64.2 NC_001798.1 + 154170 0.72 0.239732
Target:  5'- cGGCGUagGCCCGGagccgGaGCGCGuCGGGGCg -3'
miRNA:   3'- uCCGCGg-CGGGCUa----C-CGCGU-GUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.