Results 1 - 20 of 468 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5188 | 3' | -48.7 | NC_001798.1 | + | 133109 | 0.66 | 0.999501 |
Target: 5'- uGGAGGCcugucuucgcguccCCAu--GGCCGCCCa -3' miRNA: 3'- -CCUUCGccuuuu--------GGUuuuUCGGCGGG- -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 93379 | 0.66 | 0.999443 |
Target: 5'- cGGGccGGCGGAccccaaGGACCAc--AGCaaGCCCu -3' miRNA: 3'- -CCU--UCGCCU------UUUGGUuuuUCGg-CGGG- -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 83214 | 0.66 | 0.999443 |
Target: 5'- aGGggGaaaGGggGGCaaCGAGAgacGGCCGCg- -3' miRNA: 3'- -CCuuCg--CCuuUUG--GUUUU---UCGGCGgg -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 78929 | 0.66 | 0.999443 |
Target: 5'- cGAGGCGGAGuggGACgAGgucuGGGGUCGCUUu -3' miRNA: 3'- cCUUCGCCUU---UUGgUU----UUUCGGCGGG- -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 59165 | 0.66 | 0.999443 |
Target: 5'- cGAGGCGGggGcGCCc----GUCGUCCc -3' miRNA: 3'- cCUUCGCCuuU-UGGuuuuuCGGCGGG- -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 55127 | 0.66 | 0.999443 |
Target: 5'- cGGAccCGGGAcuaAGCCu----GUCGCCCa -3' miRNA: 3'- -CCUucGCCUU---UUGGuuuuuCGGCGGG- -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 39551 | 0.66 | 0.999443 |
Target: 5'- -uGGGUGGc--GCCG--GGGCCGUCCg -3' miRNA: 3'- ccUUCGCCuuuUGGUuuUUCGGCGGG- -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 24666 | 0.66 | 0.999443 |
Target: 5'- --uGGCGGccguGCCGGGGcuGGCCggaGCCCg -3' miRNA: 3'- ccuUCGCCuuu-UGGUUUU--UCGG---CGGG- -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 21568 | 0.66 | 0.999443 |
Target: 5'- gGGggGgGGAgggaaaggcaGAACgAAAAGGaaccgaugCGCCCg -3' miRNA: 3'- -CCuuCgCCU----------UUUGgUUUUUCg-------GCGGG- -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 107311 | 0.66 | 0.999443 |
Target: 5'- gGGcGAGCGGcuuGACCuggccauGCUGUCCg -3' miRNA: 3'- -CC-UUCGCCuu-UUGGuuuuu--CGGCGGG- -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 134264 | 0.66 | 0.999443 |
Target: 5'- uGGcGGCccuGGAGcGCCAGAcGGGCCgguggGCCCu -3' miRNA: 3'- -CCuUCG---CCUUuUGGUUU-UUCGG-----CGGG- -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 34317 | 0.66 | 0.999443 |
Target: 5'- cGGGcgguGCGGcuGACCu----GCCuGCCCu -3' miRNA: 3'- -CCUu---CGCCuuUUGGuuuuuCGG-CGGG- -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 132206 | 0.66 | 0.999443 |
Target: 5'- gGGGAGCuGGAGGcgcGCCu---GGCCGgCg -3' miRNA: 3'- -CCUUCG-CCUUU---UGGuuuuUCGGCgGg -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 129341 | 0.66 | 0.999443 |
Target: 5'- cGGccGCGGAGcgcccgccgGGCCuggcGGGGCC-CCCg -3' miRNA: 3'- -CCuuCGCCUU---------UUGGuu--UUUCGGcGGG- -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 74412 | 0.66 | 0.999443 |
Target: 5'- --cGGCGGAccuGACCGcc--GCgGCCCu -3' miRNA: 3'- ccuUCGCCUu--UUGGUuuuuCGgCGGG- -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 59547 | 0.66 | 0.999443 |
Target: 5'- cGGAAgGCGGAGAggggGCUggGGcucgcGUCGCCg -3' miRNA: 3'- -CCUU-CGCCUUU----UGGuuUUu----CGGCGGg -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 44279 | 0.66 | 0.999443 |
Target: 5'- gGGggGCGGugcuGCC-----GCUGCCg -3' miRNA: 3'- -CCuuCGCCuuu-UGGuuuuuCGGCGGg -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 42697 | 0.66 | 0.999443 |
Target: 5'- cGgcGuCGGGGAACCAGuccccGUCGCCg -3' miRNA: 3'- cCuuC-GCCUUUUGGUUuuu--CGGCGGg -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 42277 | 0.66 | 0.999443 |
Target: 5'- cGAAGaCGGGcaauAACCGGccgcacgcGGAGCCGUCg -3' miRNA: 3'- cCUUC-GCCUu---UUGGUU--------UUUCGGCGGg -5' |
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5188 | 3' | -48.7 | NC_001798.1 | + | 120548 | 0.66 | 0.999443 |
Target: 5'- --cAGCucGggGGCCAucAGGCCGCUg -3' miRNA: 3'- ccuUCGc-CuuUUGGUuuUUCGGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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