miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 3' -48.7 NC_001798.1 + 133109 0.66 0.999501
Target:  5'- uGGAGGCcugucuucgcguccCCAu--GGCCGCCCa -3'
miRNA:   3'- -CCUUCGccuuuu--------GGUuuuUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 150583 0.66 0.999443
Target:  5'- cGgcGCGGAGAcgGCgGggGAGAGUCGCUg -3'
miRNA:   3'- cCuuCGCCUUU--UGgU--UUUUCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 21568 0.66 0.999443
Target:  5'- gGGggGgGGAgggaaaggcaGAACgAAAAGGaaccgaugCGCCCg -3'
miRNA:   3'- -CCuuCgCCU----------UUUGgUUUUUCg-------GCGGG- -5'
5188 3' -48.7 NC_001798.1 + 24666 0.66 0.999443
Target:  5'- --uGGCGGccguGCCGGGGcuGGCCggaGCCCg -3'
miRNA:   3'- ccuUCGCCuuu-UGGUUUU--UCGG---CGGG- -5'
5188 3' -48.7 NC_001798.1 + 39551 0.66 0.999443
Target:  5'- -uGGGUGGc--GCCG--GGGCCGUCCg -3'
miRNA:   3'- ccUUCGCCuuuUGGUuuUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 55127 0.66 0.999443
Target:  5'- cGGAccCGGGAcuaAGCCu----GUCGCCCa -3'
miRNA:   3'- -CCUucGCCUU---UUGGuuuuuCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 59165 0.66 0.999443
Target:  5'- cGAGGCGGggGcGCCc----GUCGUCCc -3'
miRNA:   3'- cCUUCGCCuuU-UGGuuuuuCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 78929 0.66 0.999443
Target:  5'- cGAGGCGGAGuggGACgAGgucuGGGGUCGCUUu -3'
miRNA:   3'- cCUUCGCCUU---UUGgUU----UUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 83214 0.66 0.999443
Target:  5'- aGGggGaaaGGggGGCaaCGAGAgacGGCCGCg- -3'
miRNA:   3'- -CCuuCg--CCuuUUG--GUUUU---UCGGCGgg -5'
5188 3' -48.7 NC_001798.1 + 93379 0.66 0.999443
Target:  5'- cGGGccGGCGGAccccaaGGACCAc--AGCaaGCCCu -3'
miRNA:   3'- -CCU--UCGCCU------UUUGGUuuuUCGg-CGGG- -5'
5188 3' -48.7 NC_001798.1 + 107311 0.66 0.999443
Target:  5'- gGGcGAGCGGcuuGACCuggccauGCUGUCCg -3'
miRNA:   3'- -CC-UUCGCCuu-UUGGuuuuu--CGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 134264 0.66 0.999443
Target:  5'- uGGcGGCccuGGAGcGCCAGAcGGGCCgguggGCCCu -3'
miRNA:   3'- -CCuUCG---CCUUuUGGUUU-UUCGG-----CGGG- -5'
5188 3' -48.7 NC_001798.1 + 34317 0.66 0.999443
Target:  5'- cGGGcgguGCGGcuGACCu----GCCuGCCCu -3'
miRNA:   3'- -CCUu---CGCCuuUUGGuuuuuCGG-CGGG- -5'
5188 3' -48.7 NC_001798.1 + 42277 0.66 0.999443
Target:  5'- cGAAGaCGGGcaauAACCGGccgcacgcGGAGCCGUCg -3'
miRNA:   3'- cCUUC-GCCUu---UUGGUU--------UUUCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 42697 0.66 0.999443
Target:  5'- cGgcGuCGGGGAACCAGuccccGUCGCCg -3'
miRNA:   3'- cCuuC-GCCUUUUGGUUuuu--CGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 44279 0.66 0.999443
Target:  5'- gGGggGCGGugcuGCC-----GCUGCCg -3'
miRNA:   3'- -CCuuCGCCuuu-UGGuuuuuCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 59547 0.66 0.999443
Target:  5'- cGGAAgGCGGAGAggggGCUggGGcucgcGUCGCCg -3'
miRNA:   3'- -CCUU-CGCCUUU----UGGuuUUu----CGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 74412 0.66 0.999443
Target:  5'- --cGGCGGAccuGACCGcc--GCgGCCCu -3'
miRNA:   3'- ccuUCGCCUu--UUGGUuuuuCGgCGGG- -5'
5188 3' -48.7 NC_001798.1 + 129341 0.66 0.999443
Target:  5'- cGGccGCGGAGcgcccgccgGGCCuggcGGGGCC-CCCg -3'
miRNA:   3'- -CCuuCGCCUU---------UUGGuu--UUUCGGcGGG- -5'
5188 3' -48.7 NC_001798.1 + 132206 0.66 0.999443
Target:  5'- gGGGAGCuGGAGGcgcGCCu---GGCCGgCg -3'
miRNA:   3'- -CCUUCG-CCUUU---UGGuuuuUCGGCgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.