miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 74424 0.66 0.485502
Target:  5'- cCGccGCGGCCCUGCaCCUCuaCGGgGCCAg -3'
miRNA:   3'- -GCucCGCUGGGGCG-GGGG--GCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 7634 0.66 0.485502
Target:  5'- gCGcGGacCGGCCCCcggaGUCCCCCGGCuCCGa -3'
miRNA:   3'- -GCuCC--GCUGGGG----CGGGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 10406 0.66 0.485502
Target:  5'- aGGGGCGGgcUCCaCGaCCagaaCCaCCGACGCCAc -3'
miRNA:   3'- gCUCCGCU--GGG-GC-GG----GG-GGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 27108 0.66 0.485502
Target:  5'- -cAGGUGGCCCgaGCCCCCC--CGCa- -3'
miRNA:   3'- gcUCCGCUGGGg-CGGGGGGcuGCGgu -5'
5188 5' -66.8 NC_001798.1 + 29849 0.66 0.485502
Target:  5'- aGAgGGCGACCCCcgggucucagGCCCCCCcuuuuccccgGACcacCCGg -3'
miRNA:   3'- gCU-CCGCUGGGG----------CGGGGGG----------CUGc--GGU- -5'
5188 5' -66.8 NC_001798.1 + 34970 0.66 0.485502
Target:  5'- gGGGGCGGCCgCCgaggugcggggGCCCCuCCG--GCCGg -3'
miRNA:   3'- gCUCCGCUGG-GG-----------CGGGG-GGCugCGGU- -5'
5188 5' -66.8 NC_001798.1 + 55081 0.66 0.485502
Target:  5'- uGGGGCGggucuGCCCUcuucuCCCCUCGGCggGCCAc -3'
miRNA:   3'- gCUCCGC-----UGGGGc----GGGGGGCUG--CGGU- -5'
5188 5' -66.8 NC_001798.1 + 3295 0.66 0.485502
Target:  5'- --cGGCGACgCCGCCg-CCGACGgCAa -3'
miRNA:   3'- gcuCCGCUGgGGCGGggGGCUGCgGU- -5'
5188 5' -66.8 NC_001798.1 + 5729 0.66 0.485502
Target:  5'- --uGGCG-CCCUGCCCggggCCCG-CGUCAu -3'
miRNA:   3'- gcuCCGCuGGGGCGGG----GGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 115318 0.66 0.485502
Target:  5'- cCGGGGaccugGugCCCGCCCCCg---GCCAc -3'
miRNA:   3'- -GCUCCg----CugGGGCGGGGGgcugCGGU- -5'
5188 5' -66.8 NC_001798.1 + 91314 0.66 0.485502
Target:  5'- gGGGGCaaaaaACCCagaCGCCgCCCGAgcCGCCGg -3'
miRNA:   3'- gCUCCGc----UGGG---GCGGgGGGCU--GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 61696 0.66 0.485502
Target:  5'- -aAGGCGAUCCUGgCCCgCaCGACgGCCc -3'
miRNA:   3'- gcUCCGCUGGGGCgGGG-G-GCUG-CGGu -5'
5188 5' -66.8 NC_001798.1 + 26456 0.66 0.485502
Target:  5'- gGAcGCGGgCCCGCCCCCgcaGAuaCGCUg -3'
miRNA:   3'- gCUcCGCUgGGGCGGGGGg--CU--GCGGu -5'
5188 5' -66.8 NC_001798.1 + 15134 0.66 0.485502
Target:  5'- uCGGGGgGuuCgCCG-UCCCCGGCGCCc -3'
miRNA:   3'- -GCUCCgCugG-GGCgGGGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 5867 0.66 0.485502
Target:  5'- --uGGCG-CCCUGCCCggggCCCG-CGUCAu -3'
miRNA:   3'- gcuCCGCuGGGGCGGG----GGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 61464 0.66 0.484625
Target:  5'- cCGGGGCcuccgGGCCCCGgagggcuacuuuaCCCCCau-CGCCGu -3'
miRNA:   3'- -GCUCCG-----CUGGGGC-------------GGGGGgcuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 92928 0.66 0.484625
Target:  5'- uCGAGGCGgucgucgGgCCCGCCg-CCGugGCCc -3'
miRNA:   3'- -GCUCCGC-------UgGGGCGGggGGCugCGGu -5'
5188 5' -66.8 NC_001798.1 + 23857 0.66 0.484625
Target:  5'- -uGGGCGACagCCGCCCCggCCucuggggGGCGCCc -3'
miRNA:   3'- gcUCCGCUGg-GGCGGGG--GG-------CUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 154098 0.66 0.48025
Target:  5'- cCGGGGCgcggccggcgccgggGACCCCGgCggcggggaCCCCGGCGgCGg -3'
miRNA:   3'- -GCUCCG---------------CUGGGGCgG--------GGGGCUGCgGU- -5'
5188 5' -66.8 NC_001798.1 + 84111 0.66 0.476765
Target:  5'- -cGGGCGuCCaggccgaggCGCCCCuuGACGUCGu -3'
miRNA:   3'- gcUCCGCuGGg--------GCGGGGggCUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.