miRNA display CGI


Results 21 - 40 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 147191 0.67 0.417955
Target:  5'- -aAGGCGucCCCCGCCCggcggUCCGGC-CCGg -3'
miRNA:   3'- gcUCCGCu-GGGGCGGG-----GGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 147156 0.69 0.314663
Target:  5'- cCGGGG-GuCCCggguaGCCgCCCGGCGCCGg -3'
miRNA:   3'- -GCUCCgCuGGGg----CGGgGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 147079 0.76 0.104367
Target:  5'- --cGGCGGCCgCC-CCCUCCGGCGCCGc -3'
miRNA:   3'- gcuCCGCUGG-GGcGGGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 146594 0.69 0.295202
Target:  5'- aCGGGccgcggcgccaGCGGCCCaCGCCUCCCGcCGCa- -3'
miRNA:   3'- -GCUC-----------CGCUGGG-GCGGGGGGCuGCGgu -5'
5188 5' -66.8 NC_001798.1 + 146229 0.69 0.314663
Target:  5'- gCGAGuccCGACgCCCcCCCCCCGcCGCCc -3'
miRNA:   3'- -GCUCc--GCUG-GGGcGGGGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 145720 0.7 0.282756
Target:  5'- gCGAGcccCGGCCCCgGCCcgcgCCCCGcCGCCAc -3'
miRNA:   3'- -GCUCc--GCUGGGG-CGG----GGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 145613 0.71 0.237117
Target:  5'- gCGAcccCGACCCCGCCCCaCCGcccCGCCc -3'
miRNA:   3'- -GCUcc-GCUGGGGCGGGG-GGCu--GCGGu -5'
5188 5' -66.8 NC_001798.1 + 145536 0.66 0.459529
Target:  5'- ---cGCGcCCCCGCCCggccgCCCGcgucGCGCCGg -3'
miRNA:   3'- gcucCGCuGGGGCGGG-----GGGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 145391 0.67 0.401978
Target:  5'- aGGGGCGACgCggggaaagcgCGCCCccgCCCGGcCGCCGc -3'
miRNA:   3'- gCUCCGCUGgG----------GCGGG---GGGCU-GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 144328 0.68 0.342096
Target:  5'- aGGGGCGGCgUCGCaUCgCCCGACaGCCc -3'
miRNA:   3'- gCUCCGCUGgGGCG-GG-GGGCUG-CGGu -5'
5188 5' -66.8 NC_001798.1 + 143877 0.68 0.349219
Target:  5'- gGAGuGgGACgCCGCCgCCCCG-CGCUu -3'
miRNA:   3'- gCUC-CgCUGgGGCGG-GGGGCuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 143506 0.69 0.328168
Target:  5'- aGAGGgGACCCUcucuUCCCCC-ACGCCc -3'
miRNA:   3'- gCUCCgCUGGGGc---GGGGGGcUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 139292 0.67 0.417955
Target:  5'- gGGGGCGcauagcGCCgcgucgCCGCCCCgcguccgcaucgCCGGCGCCc -3'
miRNA:   3'- gCUCCGC------UGG------GGCGGGG------------GGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 138730 0.67 0.394137
Target:  5'- cCGGGccggcgcgcuccGCGGCCCCGgCgaCCGugGCCAg -3'
miRNA:   3'- -GCUC------------CGCUGGGGCgGggGGCugCGGU- -5'
5188 5' -66.8 NC_001798.1 + 138344 0.68 0.356446
Target:  5'- gCGAGGCGGCCgagCCGgCCUUCGucuCGUCAu -3'
miRNA:   3'- -GCUCCGCUGG---GGCgGGGGGCu--GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 137922 0.75 0.123588
Target:  5'- -cGGGCGGCCCgCGCcuCCCCCGGcCGCCc -3'
miRNA:   3'- gcUCCGCUGGG-GCG--GGGGGCU-GCGGu -5'
5188 5' -66.8 NC_001798.1 + 137057 0.69 0.310694
Target:  5'- aCGucGGCuGGuCCCCGCagcgcuuaaaguaauCCUCCGACGCCAc -3'
miRNA:   3'- -GCu-CCG-CU-GGGGCG---------------GGGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 136828 0.66 0.476765
Target:  5'- gCGuGGCGGgCCaCGaCCCCCaaccACGCCGa -3'
miRNA:   3'- -GCuCCGCUgGG-GC-GGGGGgc--UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 135909 0.66 0.433487
Target:  5'- gCGAGGCcgacGACCCCcuGCCCCaaaCGgccuuccgcggagGCGCCc -3'
miRNA:   3'- -GCUCCG----CUGGGG--CGGGGg--GC-------------UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 135589 0.7 0.27669
Target:  5'- ---cGCG-CCUCGCCCCCUcccuGGCGCCAg -3'
miRNA:   3'- gcucCGCuGGGGCGGGGGG----CUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.