miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 3' -58.3 NC_001798.1 + 89011 0.66 0.830756
Target:  5'- aGCGgau-CuGCUUUCGcauGGCCAGCCAg -3'
miRNA:   3'- -UGCaaguGcCGGAAGCu--CCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 60954 0.66 0.830756
Target:  5'- cGCGUcgugUCACcgGGCCcg-GAGGCgCGGCCGu -3'
miRNA:   3'- -UGCA----AGUG--CCGGaagCUCCG-GUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 23796 0.66 0.830756
Target:  5'- aGCGgggagcCGUGGCC--CGGGGCCGGCCc -3'
miRNA:   3'- -UGCaa----GUGCCGGaaGCUCCGGUCGGu -5'
5193 3' -58.3 NC_001798.1 + 112240 0.66 0.830756
Target:  5'- gGCGacCauGCGGUCUUUGGGGCCuGUCc -3'
miRNA:   3'- -UGCaaG--UGCCGGAAGCUCCGGuCGGu -5'
5193 3' -58.3 NC_001798.1 + 85255 0.66 0.822401
Target:  5'- ----cCGCGGCCgcgCGGGGCCGcGCgCGa -3'
miRNA:   3'- ugcaaGUGCCGGaa-GCUCCGGU-CG-GU- -5'
5193 3' -58.3 NC_001798.1 + 2424 0.66 0.820709
Target:  5'- gGCGUguggCugGGCCccggcggcuggCGGcGCCAGCCGc -3'
miRNA:   3'- -UGCAa---GugCCGGaa---------GCUcCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 60346 0.66 0.817306
Target:  5'- gGCGUUCACcaccuucgugagcugGGgCUUCguGAGGCgCAGCUg -3'
miRNA:   3'- -UGCAAGUG---------------CCgGAAG--CUCCG-GUCGGu -5'
5193 3' -58.3 NC_001798.1 + 121992 0.66 0.80519
Target:  5'- ----aCGCGGCCUccggcgucgccUCGGGGCUccGCCAg -3'
miRNA:   3'- ugcaaGUGCCGGA-----------AGCUCCGGu-CGGU- -5'
5193 3' -58.3 NC_001798.1 + 81529 0.66 0.79635
Target:  5'- uACGcacCGCGGCCcaUCG-GGCCGGCa- -3'
miRNA:   3'- -UGCaa-GUGCCGGa-AGCuCCGGUCGgu -5'
5193 3' -58.3 NC_001798.1 + 134149 0.66 0.787366
Target:  5'- gACG-UCuCGGCCccCGGGGCCgucgcGGCCGc -3'
miRNA:   3'- -UGCaAGuGCCGGaaGCUCCGG-----UCGGU- -5'
5193 3' -58.3 NC_001798.1 + 114768 0.66 0.787366
Target:  5'- gGCGgccaUCGCcgcgaGGCCaUCGAGGCCuGGCUc -3'
miRNA:   3'- -UGCa---AGUG-----CCGGaAGCUCCGG-UCGGu -5'
5193 3' -58.3 NC_001798.1 + 123901 0.67 0.778246
Target:  5'- cACGgaCACGGCCcccgaaucCGGGGCguGCUg -3'
miRNA:   3'- -UGCaaGUGCCGGaa------GCUCCGguCGGu -5'
5193 3' -58.3 NC_001798.1 + 78583 0.67 0.768997
Target:  5'- cGCGagCGCcgGGCCcagaUCGAGGCCgagggccuGGCCAa -3'
miRNA:   3'- -UGCaaGUG--CCGGa---AGCUCCGG--------UCGGU- -5'
5193 3' -58.3 NC_001798.1 + 96976 0.67 0.768997
Target:  5'- cGCGgacCGCGGCgggcggCGGGGCCAggGCCGg -3'
miRNA:   3'- -UGCaa-GUGCCGgaa---GCUCCGGU--CGGU- -5'
5193 3' -58.3 NC_001798.1 + 54542 0.67 0.766199
Target:  5'- cACGUcgaCGCGGCCgacCGGGgucccgagcccugcGCCGGCCGg -3'
miRNA:   3'- -UGCAa--GUGCCGGaa-GCUC--------------CGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 17219 0.67 0.759629
Target:  5'- uUGUcgCACGGCCgccuUUCGGGGUCgcgcggGGCCGa -3'
miRNA:   3'- uGCAa-GUGCCGG----AAGCUCCGG------UCGGU- -5'
5193 3' -58.3 NC_001798.1 + 73963 0.67 0.759629
Target:  5'- gACGcgCGCGGCCgcgggcUCcGGGCC-GCCGc -3'
miRNA:   3'- -UGCaaGUGCCGGa-----AGcUCCGGuCGGU- -5'
5193 3' -58.3 NC_001798.1 + 76477 0.67 0.759629
Target:  5'- aGCaggCGCGGCgCagcUCGGGGCUGGCCGa -3'
miRNA:   3'- -UGcaaGUGCCG-Ga--AGCUCCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 76557 0.67 0.759629
Target:  5'- aGCGa-CGCGGCCUUCGucccGGCgacCGGCCc -3'
miRNA:   3'- -UGCaaGUGCCGGAAGCu---CCG---GUCGGu -5'
5193 3' -58.3 NC_001798.1 + 18839 0.67 0.750151
Target:  5'- -gGUUCGCccGGCgaacCUUCGcAGGCUGGCCGa -3'
miRNA:   3'- ugCAAGUG--CCG----GAAGC-UCCGGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.