miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 3' -65 NC_001798.1 + 80946 0.67 0.413087
Target:  5'- -cGCCgacGGGCCCCCGUgccugguccUCgUGgacaucuccaugaccCCGGUCg -3'
miRNA:   3'- aaCGG---CCCGGGGGCA---------AGgAC---------------GGCCAG- -5'
5194 3' -65 NC_001798.1 + 79986 0.74 0.155145
Target:  5'- -cGCCGGGCCCCCGggggUCCcagcGCCacugcGUCg -3'
miRNA:   3'- aaCGGCCCGGGGGCa---AGGa---CGGc----CAG- -5'
5194 3' -65 NC_001798.1 + 77435 0.68 0.369844
Target:  5'- -cGCCGGGCCUgCGc-CCaGCCGGa- -3'
miRNA:   3'- aaCGGCCCGGGgGCaaGGaCGGCCag -5'
5194 3' -65 NC_001798.1 + 77086 0.66 0.461079
Target:  5'- -cGCCGacGCCCCCGagaC-GCCGGUCc -3'
miRNA:   3'- aaCGGCc-CGGGGGCaagGaCGGCCAG- -5'
5194 3' -65 NC_001798.1 + 75962 0.66 0.469957
Target:  5'- -cGCCGGGCCCCUGa-CCgugaUGCCcGUg -3'
miRNA:   3'- aaCGGCCCGGGGGCaaGG----ACGGcCAg -5'
5194 3' -65 NC_001798.1 + 73243 0.66 0.478021
Target:  5'- -gGCCcggGGGCCCCCGgggaCCUggaggcccaagauGCCGG-Cg -3'
miRNA:   3'- aaCGG---CCCGGGGGCaa--GGA-------------CGGCCaG- -5'
5194 3' -65 NC_001798.1 + 69331 0.68 0.362183
Target:  5'- -cGCCGGGCUCCCcugaggaucuuGUccacggCCUGCuCGGUa -3'
miRNA:   3'- aaCGGCCCGGGGG-----------CAa-----GGACG-GCCAg -5'
5194 3' -65 NC_001798.1 + 67579 0.67 0.401578
Target:  5'- --cUCGGGCUCCCGggguUCCUGUCGuUCg -3'
miRNA:   3'- aacGGCCCGGGGGCa---AGGACGGCcAG- -5'
5194 3' -65 NC_001798.1 + 59881 0.69 0.311011
Target:  5'- -gGUCGGGCCggCCCGagagUCCUGggacgccaagcucCCGGUCg -3'
miRNA:   3'- aaCGGCCCGG--GGGCa---AGGAC-------------GGCCAG- -5'
5194 3' -65 NC_001798.1 + 53841 0.66 0.469957
Target:  5'- -cGCCuGGGCCCCg---CCgaucGCCGGUUc -3'
miRNA:   3'- aaCGG-CCCGGGGgcaaGGa---CGGCCAG- -5'
5194 3' -65 NC_001798.1 + 53067 0.69 0.339868
Target:  5'- -gGCgGGGCCCCCGa-CCgaaCGGUCu -3'
miRNA:   3'- aaCGgCCCGGGGGCaaGGacgGCCAG- -5'
5194 3' -65 NC_001798.1 + 51203 0.66 0.497097
Target:  5'- -cGCCGGGCgUCCuUUCCgcGCCccaGGUCc -3'
miRNA:   3'- aaCGGCCCGgGGGcAAGGa-CGG---CCAG- -5'
5194 3' -65 NC_001798.1 + 38435 0.66 0.469957
Target:  5'- -gGCCGGGgCCCCacauuuaUCCgGUgGGUCa -3'
miRNA:   3'- aaCGGCCCgGGGGca-----AGGaCGgCCAG- -5'
5194 3' -65 NC_001798.1 + 36402 0.73 0.175099
Target:  5'- -cGCCGGGgCCCC---CCUGCCGGg- -3'
miRNA:   3'- aaCGGCCCgGGGGcaaGGACGGCCag -5'
5194 3' -65 NC_001798.1 + 36231 0.68 0.377615
Target:  5'- -cGCCGcGCCCgCGUUUCUGCCGc-- -3'
miRNA:   3'- aaCGGCcCGGGgGCAAGGACGGCcag -5'
5194 3' -65 NC_001798.1 + 34986 0.67 0.443593
Target:  5'- gUGCgGGGgCCCC--UCCgGCCGGg- -3'
miRNA:   3'- aACGgCCCgGGGGcaAGGaCGGCCag -5'
5194 3' -65 NC_001798.1 + 34881 0.66 0.478922
Target:  5'- -cGCCGGGCggcuaCCCGggacccCCgGCCGGg- -3'
miRNA:   3'- aaCGGCCCGg----GGGCaa----GGaCGGCCag -5'
5194 3' -65 NC_001798.1 + 34811 0.71 0.249127
Target:  5'- -gGCCccgGGGCCCCCGcgcUCC-GCCGGg- -3'
miRNA:   3'- aaCGG---CCCGGGGGCa--AGGaCGGCCag -5'
5194 3' -65 NC_001798.1 + 33200 0.66 0.478922
Target:  5'- -aGCCGcccccaCCCCCGaggCCUGuuGGUCu -3'
miRNA:   3'- aaCGGCcc----GGGGGCaa-GGACggCCAG- -5'
5194 3' -65 NC_001798.1 + 32071 0.68 0.359906
Target:  5'- -cGCCGcGCCCCCGUcggcgucuccgucgUCCcagGCCgcGGUCg -3'
miRNA:   3'- aaCGGCcCGGGGGCA--------------AGGa--CGG--CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.