miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 5' -53.9 NC_001798.1 + 143815 0.66 0.958033
Target:  5'- cCCGGGcggcgcgcggccAGCCGuUGGAcCACCccGCCCAc -3'
miRNA:   3'- -GGCUU------------UCGGU-ACCU-GUGGuuCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 22255 0.66 0.958033
Target:  5'- gCGGAAGCCGcccGCGCCGGGCgCUAAu -3'
miRNA:   3'- gGCUUUCGGUaccUGUGGUUCG-GGUU- -5'
5194 5' -53.9 NC_001798.1 + 34796 0.66 0.958033
Target:  5'- gCCGGcgcGGCCcgGGGCcCCgGGGCCCc- -3'
miRNA:   3'- -GGCUu--UCGGuaCCUGuGG-UUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 72449 0.66 0.958033
Target:  5'- uUCGAGAGCgAcGGGCACC--GCCUg- -3'
miRNA:   3'- -GGCUUUCGgUaCCUGUGGuuCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 72518 0.66 0.958033
Target:  5'- cCCG-AGGCCAUGGGCGacgcgguGAGCCa-- -3'
miRNA:   3'- -GGCuUUCGGUACCUGUgg-----UUCGGguu -5'
5194 5' -53.9 NC_001798.1 + 103957 0.66 0.958033
Target:  5'- gCCGAugcguGCCugcUGGGCGagcagcCCAGGCCCc- -3'
miRNA:   3'- -GGCUuu---CGGu--ACCUGU------GGUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 149659 0.66 0.958033
Target:  5'- gCCGGgcGCCGggucgcGGGCcCCGGGCUCGGg -3'
miRNA:   3'- -GGCUuuCGGUa-----CCUGuGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 99509 0.66 0.958033
Target:  5'- aCGAAGGCCcgGGccacguCGCCGAcGaCCCGc -3'
miRNA:   3'- gGCUUUCGGuaCCu-----GUGGUU-C-GGGUu -5'
5194 5' -53.9 NC_001798.1 + 127884 0.66 0.958033
Target:  5'- aCCGggGGCCccGGGuucCCAuuGGCCCc- -3'
miRNA:   3'- -GGCuuUCGGuaCCUgu-GGU--UCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 30402 0.66 0.957652
Target:  5'- uUCGAGgcgGGCCugAUGGACgcgGCCAcgcccccGGCCCGg -3'
miRNA:   3'- -GGCUU---UCGG--UACCUG---UGGU-------UCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 91795 0.66 0.957652
Target:  5'- gCCGAugacgcgcGGGgCGUGGGgACCGugggcggGGCCCGAc -3'
miRNA:   3'- -GGCU--------UUCgGUACCUgUGGU-------UCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 77512 0.66 0.954122
Target:  5'- -gGAAAGCCucgcgGGGCACgAGGCUgGGu -3'
miRNA:   3'- ggCUUUCGGua---CCUGUGgUUCGGgUU- -5'
5194 5' -53.9 NC_001798.1 + 3782 0.66 0.954122
Target:  5'- aCGGgcGCCG-GGGCGCCcgAGGCCuCGAa -3'
miRNA:   3'- gGCUuuCGGUaCCUGUGG--UUCGG-GUU- -5'
5194 5' -53.9 NC_001798.1 + 24591 0.66 0.954122
Target:  5'- gCCGcguGGCCGUGGAgUGCCuGGCCg-- -3'
miRNA:   3'- -GGCuu-UCGGUACCU-GUGGuUCGGguu -5'
5194 5' -53.9 NC_001798.1 + 43065 0.66 0.954122
Target:  5'- gCCGccGGCCGaGcGCGCCGGGCUCGGg -3'
miRNA:   3'- -GGCuuUCGGUaCcUGUGGUUCGGGUU- -5'
5194 5' -53.9 NC_001798.1 + 74648 0.66 0.954122
Target:  5'- cCCG-AGGCCccccgggGGGCcUCGGGCCCAc -3'
miRNA:   3'- -GGCuUUCGGua-----CCUGuGGUUCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 149978 0.66 0.954122
Target:  5'- aCGggGGCgCGgcgcccgcGGACGCCGgggcgagcGGCCCGu -3'
miRNA:   3'- gGCuuUCG-GUa-------CCUGUGGU--------UCGGGUu -5'
5194 5' -53.9 NC_001798.1 + 78007 0.66 0.954122
Target:  5'- gCCGAAAccuacGCCGacaUGuuucgggucGACGCCGAGCCCc- -3'
miRNA:   3'- -GGCUUU-----CGGU---AC---------CUGUGGUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 43006 0.66 0.953311
Target:  5'- cCCGAcGGCCAggccgcccggggGGAgCGCgGGGCCCc- -3'
miRNA:   3'- -GGCUuUCGGUa-----------CCU-GUGgUUCGGGuu -5'
5194 5' -53.9 NC_001798.1 + 25240 0.66 0.95166
Target:  5'- gCCGAGGGCCccGacccgcagggcggcuGGCGCCGccagccgccggGGCCCAGc -3'
miRNA:   3'- -GGCUUUCGGuaC---------------CUGUGGU-----------UCGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.