miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5195 3' -62.4 NC_001798.1 + 3762 0.66 0.61062
Target:  5'- cGCCCAGCUC-GGGCgcccacacgggCGCCGgggCGCc -3'
miRNA:   3'- aUGGGUCGAGaCCCG-----------GCGGUag-GCGu -5'
5195 3' -62.4 NC_001798.1 + 62816 0.66 0.61062
Target:  5'- gGCgCAGCUgUGGGCCcacgcGCCcccgcCCGCGu -3'
miRNA:   3'- aUGgGUCGAgACCCGG-----CGGua---GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 40400 0.66 0.61062
Target:  5'- aGCauaCGGCaggUCUGGGuCCGCC-UUCGCGu -3'
miRNA:   3'- aUGg--GUCG---AGACCC-GGCGGuAGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 117029 0.66 0.607634
Target:  5'- -cCCCGGCcCUGGGggccaacuacuucuCCuCCAUCCGCc -3'
miRNA:   3'- auGGGUCGaGACCC--------------GGcGGUAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 77596 0.66 0.600675
Target:  5'- cGCCCuGCaggagCUGGGCaagGUCAUCgGCGc -3'
miRNA:   3'- aUGGGuCGa----GACCCGg--CGGUAGgCGU- -5'
5195 3' -62.4 NC_001798.1 + 122123 0.66 0.600675
Target:  5'- uUugCCAGC-CggggGGGCCcCCGggCCGCGg -3'
miRNA:   3'- -AugGGUCGaGa---CCCGGcGGUa-GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 149466 0.66 0.600675
Target:  5'- gGCuCCAcGCgg-GGGCCGCgGcCCGCAg -3'
miRNA:   3'- aUG-GGU-CGagaCCCGGCGgUaGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 35425 0.66 0.600675
Target:  5'- gGCCUaaugcggcgggaGGCg-UGGGCCGCUGgcgCCGCGg -3'
miRNA:   3'- aUGGG------------UCGagACCCGGCGGUa--GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 40818 0.66 0.600675
Target:  5'- cGCCCc-CUggGGGCCGCUgguUCCGCGu -3'
miRNA:   3'- aUGGGucGAgaCCCGGCGGu--AGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 121247 0.66 0.590751
Target:  5'- gUGCCUGGCggcggCgGGGgucCCGCUGUCCGCc -3'
miRNA:   3'- -AUGGGUCGa----GaCCC---GGCGGUAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 52870 0.66 0.590751
Target:  5'- -uCCguGCUg-GGGCCGCgGgUCCGCGc -3'
miRNA:   3'- auGGguCGAgaCCCGGCGgU-AGGCGU- -5'
5195 3' -62.4 NC_001798.1 + 137927 0.66 0.590751
Target:  5'- gGCCCGcGcCUCccccGGCCGCCcgGUCCGCc -3'
miRNA:   3'- aUGGGU-C-GAGac--CCGGCGG--UAGGCGu -5'
5195 3' -62.4 NC_001798.1 + 29715 0.66 0.58778
Target:  5'- aACCCGGCaagagagagaccgcGGGCCGCCGUCuCGa- -3'
miRNA:   3'- aUGGGUCGaga-----------CCCGGCGGUAG-GCgu -5'
5195 3' -62.4 NC_001798.1 + 130238 0.66 0.580857
Target:  5'- aGCCCGGgUCUccGGGCgGCCcgCCa-- -3'
miRNA:   3'- aUGGGUCgAGA--CCCGgCGGuaGGcgu -5'
5195 3' -62.4 NC_001798.1 + 94720 0.66 0.580857
Target:  5'- aACCCgcaguGGUUCUGGaCCGCCcUCCaGCGc -3'
miRNA:   3'- aUGGG-----UCGAGACCcGGCGGuAGG-CGU- -5'
5195 3' -62.4 NC_001798.1 + 53612 0.66 0.571981
Target:  5'- cGCCCcGUUCaagagcgGGGCCGCCGcggccaaguacgccgCCGCGg -3'
miRNA:   3'- aUGGGuCGAGa------CCCGGCGGUa--------------GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 69839 0.66 0.570997
Target:  5'- cACUUGG-UCcGGGCCGCCGUCgGCc -3'
miRNA:   3'- aUGGGUCgAGaCCCGGCGGUAGgCGu -5'
5195 3' -62.4 NC_001798.1 + 76486 0.66 0.570997
Target:  5'- gGCgCAGCUCgGGGCUGgCCGaaCUGCAg -3'
miRNA:   3'- aUGgGUCGAGaCCCGGC-GGUa-GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 105387 0.66 0.570013
Target:  5'- gGCCUggagggcGGCguUCUccaGGGCCGCCGcggCCGCGg -3'
miRNA:   3'- aUGGG-------UCG--AGA---CCCGGCGGUa--GGCGU- -5'
5195 3' -62.4 NC_001798.1 + 58121 0.66 0.568047
Target:  5'- gGCCCGGCgUCUGGGUccuugugaaggcggCGCCGgagCCcaaGCAc -3'
miRNA:   3'- aUGGGUCG-AGACCCG--------------GCGGUa--GG---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.