miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5197 5' -58.1 NC_001798.1 + 124330 0.66 0.851208
Target:  5'- gGGCCGGGAcGGCgCGGaaagCGUCauccgCCCg -3'
miRNA:   3'- -CUGGCCUUuCCG-GUCga--GCAGga---GGG- -5'
5197 5' -58.1 NC_001798.1 + 24684 0.66 0.851208
Target:  5'- uGGCCGGAGcccGGCCcGCcgCG-CC-CCCg -3'
miRNA:   3'- -CUGGCCUUu--CCGGuCGa-GCaGGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 85821 0.66 0.850432
Target:  5'- uGACgGGggGGGgCgggggcgggcgggGGCUCGggaacgcaacCCUCCCu -3'
miRNA:   3'- -CUGgCCuuUCCgG-------------UCGAGCa---------GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 28052 0.66 0.848875
Target:  5'- cGACuCGGGAAccgcggucgagagcGcGCCGGCcgCGUCCUCgCu -3'
miRNA:   3'- -CUG-GCCUUU--------------C-CGGUCGa-GCAGGAGgG- -5'
5197 5' -58.1 NC_001798.1 + 7813 0.66 0.843366
Target:  5'- -gUCGGAcagGAGGCgCAGCUgGUUCauaCCCa -3'
miRNA:   3'- cuGGCCU---UUCCG-GUCGAgCAGGa--GGG- -5'
5197 5' -58.1 NC_001798.1 + 5575 0.66 0.843366
Target:  5'- cGCCGGccccaaAGGGGCCGGCgagGUCgC-CCCg -3'
miRNA:   3'- cUGGCC------UUUCCGGUCGag-CAG-GaGGG- -5'
5197 5' -58.1 NC_001798.1 + 141599 0.66 0.843366
Target:  5'- cGGCCGGcguGGCCgAGUUCuuggaggaGUCCcCCCu -3'
miRNA:   3'- -CUGGCCuuuCCGG-UCGAG--------CAGGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 5919 0.66 0.843366
Target:  5'- -cCCGGAcggGGGGCgGGC-CGuUCCUCgCg -3'
miRNA:   3'- cuGGCCU---UUCCGgUCGaGC-AGGAGgG- -5'
5197 5' -58.1 NC_001798.1 + 37403 0.66 0.835338
Target:  5'- cACCGGGcggguccguGGGGCCGGC-CGaCCaacCCCg -3'
miRNA:   3'- cUGGCCU---------UUCCGGUCGaGCaGGa--GGG- -5'
5197 5' -58.1 NC_001798.1 + 51848 0.66 0.835338
Target:  5'- cACaCGGAGGGGCgCGGCUCGgagCUCg- -3'
miRNA:   3'- cUG-GCCUUUCCG-GUCGAGCag-GAGgg -5'
5197 5' -58.1 NC_001798.1 + 46405 0.66 0.835338
Target:  5'- uGGCCGGcAGGGCCA-C-CGcCCcCCCg -3'
miRNA:   3'- -CUGGCCuUUCCGGUcGaGCaGGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 68780 0.66 0.835338
Target:  5'- -cCCGGGu-GGCCGGUgugUGUggCCUCCUg -3'
miRNA:   3'- cuGGCCUuuCCGGUCGa--GCA--GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 104195 0.66 0.835338
Target:  5'- -cCCGGAAacaacuGGGUCAGCUCGaCCguggggucugCCUg -3'
miRNA:   3'- cuGGCCUU------UCCGGUCGAGCaGGa---------GGG- -5'
5197 5' -58.1 NC_001798.1 + 128969 0.66 0.835338
Target:  5'- -cCCGGAgGAGGC--GCUCGUCa-CCCa -3'
miRNA:   3'- cuGGCCU-UUCCGguCGAGCAGgaGGG- -5'
5197 5' -58.1 NC_001798.1 + 82787 0.66 0.834526
Target:  5'- gGACuCGGAugauaccGAGGC--GCUCGacccCCUCCCa -3'
miRNA:   3'- -CUG-GCCU-------UUCCGguCGAGCa---GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 52981 0.66 0.819601
Target:  5'- cGACCGGGcuGGgCGGCcCGccacgcccauaggcgCCUCCCc -3'
miRNA:   3'- -CUGGCCUuuCCgGUCGaGCa--------------GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 113344 0.66 0.819601
Target:  5'- gGACCGGAcgggcgguGGcGCCGGCauguauuauagccgcCGUCCUCgCCu -3'
miRNA:   3'- -CUGGCCUu-------UC-CGGUCGa--------------GCAGGAG-GG- -5'
5197 5' -58.1 NC_001798.1 + 103184 0.66 0.818755
Target:  5'- gGugCGGucGGGCgGaacCUCGUCCcCCCg -3'
miRNA:   3'- -CugGCCuuUCCGgUc--GAGCAGGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 86894 0.66 0.818755
Target:  5'- cGCCGGGAAccCCGGCguggagCGccgggCCUCCCg -3'
miRNA:   3'- cUGGCCUUUccGGUCGa-----GCa----GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 22977 0.66 0.81621
Target:  5'- -uCCGGGGAGGCCGucgacgagccugccGCggacggCGUCgUCUCg -3'
miRNA:   3'- cuGGCCUUUCCGGU--------------CGa-----GCAGgAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.