miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5197 5' -58.1 NC_001798.1 + 104784 0.7 0.597835
Target:  5'- aGCgCGGAGgcGGGCCAGCagGUCC-CCg -3'
miRNA:   3'- cUG-GCCUU--UCCGGUCGagCAGGaGGg -5'
5197 5' -58.1 NC_001798.1 + 104195 0.66 0.835338
Target:  5'- -cCCGGAAacaacuGGGUCAGCUCGaCCguggggucugCCUg -3'
miRNA:   3'- cuGGCCUU------UCCGGUCGAGCaGGa---------GGG- -5'
5197 5' -58.1 NC_001798.1 + 103488 0.74 0.39303
Target:  5'- -uCUGGGuccAGGGCCAGCUCGcCCgggUCCCc -3'
miRNA:   3'- cuGGCCU---UUCCGGUCGAGCaGG---AGGG- -5'
5197 5' -58.1 NC_001798.1 + 103184 0.66 0.818755
Target:  5'- gGugCGGucGGGCgGaacCUCGUCCcCCCg -3'
miRNA:   3'- -CugGCCuuUCCGgUc--GAGCAGGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 102494 0.68 0.707812
Target:  5'- aGugCGGGGacGGGCCGGCgccggggUGUCCguaggccaccgUCCCc -3'
miRNA:   3'- -CugGCCUU--UCCGGUCGa------GCAGG-----------AGGG- -5'
5197 5' -58.1 NC_001798.1 + 102214 0.71 0.537457
Target:  5'- cGCCGGGAgucgaccGGGCgCGGCUCGgggcgggCCUCgCCc -3'
miRNA:   3'- cUGGCCUU-------UCCG-GUCGAGCa------GGAG-GG- -5'
5197 5' -58.1 NC_001798.1 + 96992 0.69 0.668107
Target:  5'- cGGCgGGGccAGGGCCGGCcCG-CCgCCCg -3'
miRNA:   3'- -CUGgCCU--UUCCGGUCGaGCaGGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 90398 0.69 0.678096
Target:  5'- gGGCgCGGuuGGGCCGGCgCGU--UCCCg -3'
miRNA:   3'- -CUG-GCCuuUCCGGUCGaGCAggAGGG- -5'
5197 5' -58.1 NC_001798.1 + 90240 1.11 0.001519
Target:  5'- cGACCGGAAAGGCCAGCUCGUCCUCCCc -3'
miRNA:   3'- -CUGGCCUUUCCGGUCGAGCAGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 88750 0.68 0.727327
Target:  5'- gGACCGGggGcgcgcauGCCGGC-CG-CCUCCg -3'
miRNA:   3'- -CUGGCCuuUc------CGGUCGaGCaGGAGGg -5'
5197 5' -58.1 NC_001798.1 + 88053 0.83 0.113558
Target:  5'- cGCUGGggGGGCgGGCUCGUCC-CCUg -3'
miRNA:   3'- cUGGCCuuUCCGgUCGAGCAGGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 86894 0.66 0.818755
Target:  5'- cGCCGGGAAccCCGGCguggagCGccgggCCUCCCg -3'
miRNA:   3'- cUGGCCUUUccGGUCGa-----GCa----GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 86448 0.67 0.765336
Target:  5'- -cCCGGGgacgGGGGCCGGUUCGUgagCCUgCUu -3'
miRNA:   3'- cuGGCCU----UUCCGGUCGAGCA---GGAgGG- -5'
5197 5' -58.1 NC_001798.1 + 85821 0.66 0.850432
Target:  5'- uGACgGGggGGGgCgggggcgggcgggGGCUCGggaacgcaacCCUCCCu -3'
miRNA:   3'- -CUGgCCuuUCCgG-------------UCGAGCa---------GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 84346 0.67 0.755983
Target:  5'- cGAUCGGGAAGGCC---UCGUCggaCCCa -3'
miRNA:   3'- -CUGGCCUUUCCGGucgAGCAGga-GGG- -5'
5197 5' -58.1 NC_001798.1 + 82787 0.66 0.834526
Target:  5'- gGACuCGGAugauaccGAGGC--GCUCGacccCCUCCCa -3'
miRNA:   3'- -CUG-GCCU-------UUCCGguCGAGCa---GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 75455 0.74 0.401368
Target:  5'- aGGCCGGGGuGGCCGGCcCGgCCgcggCCCu -3'
miRNA:   3'- -CUGGCCUUuCCGGUCGaGCaGGa---GGG- -5'
5197 5' -58.1 NC_001798.1 + 73837 0.76 0.295294
Target:  5'- aGCCGGggGGGUCGGUUCGugcaugcgcUCgUCCCu -3'
miRNA:   3'- cUGGCCuuUCCGGUCGAGC---------AGgAGGG- -5'
5197 5' -58.1 NC_001798.1 + 69305 0.7 0.617899
Target:  5'- cGCCGGGGAcGGUCAGC----CCUCCCg -3'
miRNA:   3'- cUGGCCUUU-CCGGUCGagcaGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 68820 0.68 0.746525
Target:  5'- aGACggCGGugacgcuaGCCAGCUCGUCCUgugugaCCCa -3'
miRNA:   3'- -CUG--GCCuuuc----CGGUCGAGCAGGA------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.