miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5198 3' -60.4 NC_001798.1 + 152873 0.66 0.765351
Target:  5'- --gGCgGCCCGUuaaaagcugcuAauuaCCG-CGAGCGGGAa -3'
miRNA:   3'- guaCG-CGGGCA-----------Ug---GGCaGCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 33533 0.66 0.765351
Target:  5'- gCAUGCacGCCCucugccCCCGgggaCGGGUGGGAg -3'
miRNA:   3'- -GUACG--CGGGcau---GGGCa---GCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 98512 0.66 0.765351
Target:  5'- --cGCGCCCccguagGCCCGccaugcgCGGGgGGGGc -3'
miRNA:   3'- guaCGCGGGca----UGGGCa------GCUCgCCCU- -5'
5198 3' -60.4 NC_001798.1 + 111807 0.66 0.762611
Target:  5'- cCGUGCGCCgGUcGCgggCGUCcaggggcuggcgcgGGGCGGGAa -3'
miRNA:   3'- -GUACGCGGgCA-UGg--GCAG--------------CUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 81255 0.66 0.756179
Target:  5'- --cGcCGCCCGcgACCCG-CGGgaccuuGCGGGGg -3'
miRNA:   3'- guaC-GCGGGCa-UGGGCaGCU------CGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 154108 0.66 0.756179
Target:  5'- gCcgGCGCCgGggacCCCGgCG-GCGGGGa -3'
miRNA:   3'- -GuaCGCGGgCau--GGGCaGCuCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 15394 0.66 0.756179
Target:  5'- --gGCGCCCaccggACCCGggguugCGGGUccGGGAg -3'
miRNA:   3'- guaCGCGGGca---UGGGCa-----GCUCG--CCCU- -5'
5198 3' -60.4 NC_001798.1 + 150562 0.66 0.750626
Target:  5'- --aGCgGCCCGggGCCCG-CGgggcggcgcggagacGGCGGGGg -3'
miRNA:   3'- guaCG-CGGGCa-UGGGCaGC---------------UCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 93099 0.66 0.746905
Target:  5'- --cGCGCgacgCCGggaacaaggGCCCGgCGGGCGGGu -3'
miRNA:   3'- guaCGCG----GGCa--------UGGGCaGCUCGCCCu -5'
5198 3' -60.4 NC_001798.1 + 108885 0.66 0.746905
Target:  5'- --cGCGCUCGUGCgCGcgCGAuaCGGGAa -3'
miRNA:   3'- guaCGCGGGCAUGgGCa-GCUc-GCCCU- -5'
5198 3' -60.4 NC_001798.1 + 53606 0.66 0.737537
Target:  5'- gGUGCGCgC---CCCGUUcaaGAGCGGGGc -3'
miRNA:   3'- gUACGCGgGcauGGGCAG---CUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 16166 0.66 0.728085
Target:  5'- --aGCGCCaCGggcgGCCCG-CGGGgacCGGGGg -3'
miRNA:   3'- guaCGCGG-GCa---UGGGCaGCUC---GCCCU- -5'
5198 3' -60.4 NC_001798.1 + 25865 0.67 0.708957
Target:  5'- cCGUGCGCgCCGcggacugGCCCGcCGA-CGGGc -3'
miRNA:   3'- -GUACGCG-GGCa------UGGGCaGCUcGCCCu -5'
5198 3' -60.4 NC_001798.1 + 27110 0.67 0.708957
Target:  5'- gGUG-GCCCGaGCCCccccgcagGAGCGGGAg -3'
miRNA:   3'- gUACgCGGGCaUGGGcag-----CUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 24870 0.67 0.699298
Target:  5'- cCGUGCGCgCCGUgaGCCUGgUCGc-CGGGGc -3'
miRNA:   3'- -GUACGCG-GGCA--UGGGC-AGCucGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 7966 0.67 0.699298
Target:  5'- gCAUGCGCCUucugGUGCUuuuggcgcacgCGUCGAcguguuccuacGCGGGGu -3'
miRNA:   3'- -GUACGCGGG----CAUGG-----------GCAGCU-----------CGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 25951 0.67 0.679832
Target:  5'- aGUGCG-CCGUGCgCUGgccggCGGcGCGGGAc -3'
miRNA:   3'- gUACGCgGGCAUG-GGCa----GCU-CGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 85242 0.67 0.67004
Target:  5'- --cGCGCCCGccccCCCG-CGGccgcGCGGGGc -3'
miRNA:   3'- guaCGCGGGCau--GGGCaGCU----CGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 25032 0.67 0.67004
Target:  5'- --cGCGCCCGccUCCG-CGccGCGGGAg -3'
miRNA:   3'- guaCGCGGGCauGGGCaGCu-CGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 135987 0.67 0.660219
Target:  5'- uCGUGCGCguaUGU-CCCGg-GGGCGGGGa -3'
miRNA:   3'- -GUACGCGg--GCAuGGGCagCUCGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.