miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5199 3' -59 NC_001798.1 + 115316 0.66 0.806115
Target:  5'- cGCcGggGACCugGUGCccGC-CCCCGGc -3'
miRNA:   3'- cCGuCuuCUGG--CACGa-CGuGGGGCCa -5'
5199 3' -59 NC_001798.1 + 51137 0.66 0.806115
Target:  5'- cGcCGGGAGGCCc-GCgGuCACCCCGGg -3'
miRNA:   3'- cC-GUCUUCUGGcaCGaC-GUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 23638 0.66 0.806115
Target:  5'- cGGC-GAccgcGGGCCGccUGgaGCGCCgCCGGg -3'
miRNA:   3'- -CCGuCU----UCUGGC--ACgaCGUGG-GGCCa -5'
5199 3' -59 NC_001798.1 + 75966 0.66 0.806115
Target:  5'- gGGCcccuGACCGUGaUGCccgugcccgccGCCCCGGg -3'
miRNA:   3'- -CCGucuuCUGGCACgACG-----------UGGGGCCa -5'
5199 3' -59 NC_001798.1 + 122110 0.66 0.806115
Target:  5'- cGGCGGggGgcgcuuugccaGCCGggGggGC-CCCCGGg -3'
miRNA:   3'- -CCGUCuuC-----------UGGCa-CgaCGuGGGGCCa -5'
5199 3' -59 NC_001798.1 + 154110 0.66 0.797366
Target:  5'- cGGCGccGggGACCccgGCggcggGgACCCCGGc -3'
miRNA:   3'- -CCGU--CuuCUGGca-CGa----CgUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 3205 0.66 0.797366
Target:  5'- cGGCGcGGAGGCgGgcgcgGCgcucagGCGCCCCaGGg -3'
miRNA:   3'- -CCGU-CUUCUGgCa----CGa-----CGUGGGG-CCa -5'
5199 3' -59 NC_001798.1 + 29440 0.66 0.792047
Target:  5'- cGGCGGggGGCgGcgcaUGCUaaugggguucuuggaGUACaCCCGGUu -3'
miRNA:   3'- -CCGUCuuCUGgC----ACGA---------------CGUG-GGGCCA- -5'
5199 3' -59 NC_001798.1 + 51960 0.66 0.788473
Target:  5'- cGCGGGagGGGCCGcGCcccccCACCCCGGc -3'
miRNA:   3'- cCGUCU--UCUGGCaCGac---GUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 49857 0.66 0.788473
Target:  5'- cGGCGGAGGAacCCGgg--GCGCCCCu-- -3'
miRNA:   3'- -CCGUCUUCU--GGCacgaCGUGGGGcca -5'
5199 3' -59 NC_001798.1 + 41526 0.66 0.779446
Target:  5'- gGGCGGu--AUCGUugUGCGCCCCGGc -3'
miRNA:   3'- -CCGUCuucUGGCAcgACGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 20473 0.66 0.779446
Target:  5'- aGCAGAGcGCCgGUGCgcgUGCGcgauCCCCGGa -3'
miRNA:   3'- cCGUCUUcUGG-CACG---ACGU----GGGGCCa -5'
5199 3' -59 NC_001798.1 + 124780 0.66 0.779446
Target:  5'- uGCGGAuguGGGCCGUGUaGCcuaucuugaucCCCCGGa -3'
miRNA:   3'- cCGUCU---UCUGGCACGaCGu----------GGGGCCa -5'
5199 3' -59 NC_001798.1 + 142424 0.66 0.770291
Target:  5'- cGGCAuccuGACgGUGgUGUggACCCCGGa -3'
miRNA:   3'- -CCGUcuu-CUGgCACgACG--UGGGGCCa -5'
5199 3' -59 NC_001798.1 + 121795 0.66 0.770291
Target:  5'- gGGCGGGgccGGGCCG-GCcguugucgGCACCCCa-- -3'
miRNA:   3'- -CCGUCU---UCUGGCaCGa-------CGUGGGGcca -5'
5199 3' -59 NC_001798.1 + 111591 0.66 0.770291
Target:  5'- aGCGGggGGcCCGgcgggGCgGCcuccuggaGCCCCGGg -3'
miRNA:   3'- cCGUCuuCU-GGCa----CGaCG--------UGGGGCCa -5'
5199 3' -59 NC_001798.1 + 28863 0.66 0.770291
Target:  5'- gGGCGGccucGGCCG-GCggaGCCCCGGa -3'
miRNA:   3'- -CCGUCuu--CUGGCaCGacgUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 24168 0.66 0.770291
Target:  5'- uGGCGGcGGGCCGcuucgGCUGgGgCCUGGc -3'
miRNA:   3'- -CCGUCuUCUGGCa----CGACgUgGGGCCa -5'
5199 3' -59 NC_001798.1 + 132146 0.66 0.761018
Target:  5'- cGCcGggGGCCGgcggGCgggGCGCCCCccccGGa -3'
miRNA:   3'- cCGuCuuCUGGCa---CGa--CGUGGGG----CCa -5'
5199 3' -59 NC_001798.1 + 24127 0.66 0.761018
Target:  5'- cGGCAGcguggcgcGGGCCGUGCccCACCUgGGg -3'
miRNA:   3'- -CCGUCu-------UCUGGCACGacGUGGGgCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.