miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 3' -58.6 NC_001798.1 + 114775 0.66 0.80317
Target:  5'- -----aUCGCCgCGaGGCCAUCgAGGCCu -3'
miRNA:   3'- uagaacAGCGG-GUaCCGGUGG-UCCGG- -5'
5200 3' -58.6 NC_001798.1 + 55003 0.66 0.80317
Target:  5'- cGUCUUGcCGgCgG-GGCCGCCcuGCCg -3'
miRNA:   3'- -UAGAACaGCgGgUaCCGGUGGucCGG- -5'
5200 3' -58.6 NC_001798.1 + 47179 0.66 0.80317
Target:  5'- ---aUGUCaGCgggCAcUGGCCGCCGGGUCa -3'
miRNA:   3'- uagaACAG-CGg--GU-ACCGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 66014 0.66 0.80317
Target:  5'- ---cUGUCGCCCcagGGCgAUguGGCg -3'
miRNA:   3'- uagaACAGCGGGua-CCGgUGguCCGg -5'
5200 3' -58.6 NC_001798.1 + 3041 0.66 0.794253
Target:  5'- -------aGCCCcggcacGGCCGCCAGGUCg -3'
miRNA:   3'- uagaacagCGGGua----CCGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 111736 0.66 0.785191
Target:  5'- -gCUUGgcccccgCGCCCccGGCCccgguCCcGGCCa -3'
miRNA:   3'- uaGAACa------GCGGGuaCCGGu----GGuCCGG- -5'
5200 3' -58.6 NC_001798.1 + 147238 0.66 0.785191
Target:  5'- ----gGggGCCCcggGGCC-CCGGGCCg -3'
miRNA:   3'- uagaaCagCGGGua-CCGGuGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 42748 0.66 0.785191
Target:  5'- ----cGUCGCCCGcacagacgggcGGCgCGCgGGGCCg -3'
miRNA:   3'- uagaaCAGCGGGUa----------CCG-GUGgUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 104970 0.66 0.785191
Target:  5'- gGUCUUGgacaugCGCCCGUcucgaaagucGGCgCugCGGGUg -3'
miRNA:   3'- -UAGAACa-----GCGGGUA----------CCG-GugGUCCGg -5'
5200 3' -58.6 NC_001798.1 + 104143 0.66 0.785191
Target:  5'- cGUCga--CGCCaGUGGCCGCCccGCCu -3'
miRNA:   3'- -UAGaacaGCGGgUACCGGUGGucCGG- -5'
5200 3' -58.6 NC_001798.1 + 125063 0.66 0.775993
Target:  5'- ----cGUCuGCCCGUGGguggccacguCCACCuuGGCCc -3'
miRNA:   3'- uagaaCAG-CGGGUACC----------GGUGGu-CCGG- -5'
5200 3' -58.6 NC_001798.1 + 70548 0.66 0.775993
Target:  5'- ----cG-CGCUgGaGGCCGCCGGGCUg -3'
miRNA:   3'- uagaaCaGCGGgUaCCGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 119018 0.66 0.766668
Target:  5'- -gCUgGUCGCCCggGGCauCCGGGaCCu -3'
miRNA:   3'- uaGAaCAGCGGGuaCCGguGGUCC-GG- -5'
5200 3' -58.6 NC_001798.1 + 23646 0.66 0.766668
Target:  5'- -gCggGcCGCCUGgagcGCCGCCGGGCCc -3'
miRNA:   3'- uaGaaCaGCGGGUac--CGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 1496 0.66 0.766668
Target:  5'- ----cGUCGCCCGcgcccgaggcGGCgGCCcGGCCg -3'
miRNA:   3'- uagaaCAGCGGGUa---------CCGgUGGuCCGG- -5'
5200 3' -58.6 NC_001798.1 + 75241 0.66 0.757226
Target:  5'- uUCgagGUCcacCCCAaugUGGCCGCCAcGGCg -3'
miRNA:   3'- uAGaa-CAGc--GGGU---ACCGGUGGU-CCGg -5'
5200 3' -58.6 NC_001798.1 + 42712 0.66 0.757226
Target:  5'- aGUCcccGUCGCCguCGUcGCCACC-GGCCg -3'
miRNA:   3'- -UAGaa-CAGCGG--GUAcCGGUGGuCCGG- -5'
5200 3' -58.6 NC_001798.1 + 152351 0.66 0.757226
Target:  5'- aGUCUcUGUCuCUCcgGGucuccuccucCCGCCGGGCCg -3'
miRNA:   3'- -UAGA-ACAGcGGGuaCC----------GGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 60154 0.66 0.757226
Target:  5'- cGUCUUGgCGUUgGcGGCCGCUuGGCCc -3'
miRNA:   3'- -UAGAACaGCGGgUaCCGGUGGuCCGG- -5'
5200 3' -58.6 NC_001798.1 + 48347 0.67 0.747674
Target:  5'- ----cGUCGacgcgaCCGcGGCCGCCcgGGGCCg -3'
miRNA:   3'- uagaaCAGCg-----GGUaCCGGUGG--UCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.