miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 5' -49.6 NC_001798.1 + 15375 0.66 0.997788
Target:  5'- --cGGCCGUgGGCGCG--GCGGAGGc- -3'
miRNA:   3'- acuCCGGCG-CCGUGUuuUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 56797 0.66 0.997788
Target:  5'- cGAcGGCCGCGGagguCAC-GGugGAGAcgGUGg -3'
miRNA:   3'- aCU-CCGGCGCC----GUGuUUugCUUU--UAC- -5'
5200 5' -49.6 NC_001798.1 + 49514 0.66 0.997788
Target:  5'- cGGGGCCGCaacCGCGAccuGCGGGAGa- -3'
miRNA:   3'- aCUCCGGCGcc-GUGUUu--UGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 46144 0.66 0.997788
Target:  5'- gGAGGCCcCuGGCAUuGAGCGAc---- -3'
miRNA:   3'- aCUCCGGcG-CCGUGuUUUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 24187 0.66 0.997788
Target:  5'- cUGGGGCC-UGGCGCAcguGGCGGc---- -3'
miRNA:   3'- -ACUCCGGcGCCGUGUu--UUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 12911 0.66 0.997788
Target:  5'- uUGGGGCCGUGcCACccGGCGAu---- -3'
miRNA:   3'- -ACUCCGGCGCcGUGuuUUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 5779 0.66 0.997788
Target:  5'- cGGGGCCGCagGGUAaaaGAAGUGAGAAc- -3'
miRNA:   3'- aCUCCGGCG--CCGUg--UUUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 5641 0.66 0.997788
Target:  5'- cGGGGCCGCagGGUAaaaGAAGUGAGAAc- -3'
miRNA:   3'- aCUCCGGCG--CCGUg--UUUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 3319 0.66 0.997788
Target:  5'- cGGGGCgGCGGCgGCG--GCGGGc--- -3'
miRNA:   3'- aCUCCGgCGCCG-UGUuuUGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 104518 0.66 0.997788
Target:  5'- cGcGGCgGCGGCGCGGuuGACGucgucgcGGUGg -3'
miRNA:   3'- aCuCCGgCGCCGUGUU--UUGCuu-----UUAC- -5'
5200 5' -49.6 NC_001798.1 + 150737 0.66 0.997748
Target:  5'- aGAGGCCacucuCGGCACGAcggccgcGACGGc---- -3'
miRNA:   3'- aCUCCGGc----GCCGUGUU-------UUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 104602 0.66 0.997666
Target:  5'- cGGGGCCGCcgguagcaccccguGGCGCAccaacguGGCGAucacgacguGGGUGg -3'
miRNA:   3'- aCUCCGGCG--------------CCGUGUu------UUGCU---------UUUAC- -5'
5200 5' -49.6 NC_001798.1 + 54295 0.66 0.997624
Target:  5'- cGGGGCCGCccuGGCcccggaccugcuuCGGAGCGGAAc-- -3'
miRNA:   3'- aCUCCGGCG---CCGu------------GUUUUGCUUUuac -5'
5200 5' -49.6 NC_001798.1 + 146082 0.66 0.997361
Target:  5'- aGGGGUC-CGGgGCGAGGCGGGc--- -3'
miRNA:   3'- aCUCCGGcGCCgUGUUUUGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 92036 0.66 0.997361
Target:  5'- aGGGGCCGCucGGCGaacGGGCGGGu--- -3'
miRNA:   3'- aCUCCGGCG--CCGUgu-UUUGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 49401 0.66 0.997361
Target:  5'- gUGA-GCUGCgGGCGCGGGAgGAGAGc- -3'
miRNA:   3'- -ACUcCGGCG-CCGUGUUUUgCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 45350 0.66 0.997361
Target:  5'- gGAGGaCGUGGCgaucGCGGAGCGGGc--- -3'
miRNA:   3'- aCUCCgGCGCCG----UGUUUUGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 38931 0.66 0.997361
Target:  5'- aGGGG-CGCaGGCGCGugGCGAGGu-- -3'
miRNA:   3'- aCUCCgGCG-CCGUGUuuUGCUUUuac -5'
5200 5' -49.6 NC_001798.1 + 3211 0.66 0.997361
Target:  5'- gGAGGCgggCGCGGCGCucAGGCGc----- -3'
miRNA:   3'- aCUCCG---GCGCCGUGu-UUUGCuuuuac -5'
5200 5' -49.6 NC_001798.1 + 1838 0.66 0.997361
Target:  5'- -cGGGCCaguccGCGGCGCGcacggcguuGACGAcGAUGa -3'
miRNA:   3'- acUCCGG-----CGCCGUGUu--------UUGCUuUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.